FC931940

Overview
NameFC931940
Unique NameFC931940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.360e-37
Identity = 74/172 (43.02%), Postives = 113/172 (65.70%), Query Frame = 2
Query:  152 VKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            +  M + E L +A+DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLD PI E  FTG+ +GAA  GL+P+VE +   F + A + I N+ +   Y S G  ++P+V RGP G    + A+HSQ   + + S+PGL++++  ++ +A+GLLK+AI +  P++FLE
Sbjct:    1 MSMMFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNIPVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.743e-36
Identity = 74/165 (44.85%), Postives = 105/165 (63.64%), Query Frame = 2
Query:  173 ETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            E LN A+DEEM+ + KV L+GE++G Y G+YK+++ L  KYG  RV+DTPI E  F G  +GAA  GL  VVE +   F + A   I N+    +  S G   +PIV RGP G    +GA+HSQ    ++ SVPGL++++  +  +A+GLLK+AIR  +P+ FLE
Sbjct:    8 EALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIPIVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.171e-35
Identity = 74/165 (44.85%), Postives = 106/165 (64.24%), Query Frame = 2
Query:  173 ETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            E L  A+DEEM  + +V L+GE++G Y G+YK+++GL  KYG  RV+DTPI E  F G  VGAA  GL PVVE +   F + A   I N+       S G   VP+V RGP G    +GA+HSQ   +++ SVPGL++++  +  +A+GLLK+AIR  +P++F+E
Sbjct:    8 EALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVPMVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.831e-32
Identity = 69/165 (41.82%), Postives = 95/165 (57.58%), Query Frame = 2
Query:  173 ETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            E +N A+D+ M  D  + + GE+ G   G ++++ GL +KYG  RV DTPI E+   G  VG A  GLKP+ E     F       ++  AA+    S GQ +VP+V R P+G        HS+     + S+PGLKV++P +  DA+GLL AAI DPDPVVFLE
Sbjct:    8 EAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTVPMVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.115e-31
Identity = 70/181 (38.67%), Postives = 107/181 (59.12%), Query Frame = 2
Query:  155 KQMMVRETLNSALDEEMSADPKVFLMGEEV-------GE---YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            +++ ++  +N A+D+EM+ DP V ++GE++       GE   + G   ++KGL  K+G +R+LDTP++E+ + G  +GAA  G++P+ E +  +F     D I N AAK  YM  G+   P+V R   GA     AQHSQ     +  +PGLKV+ P +  D +GLL  AIRD DPV+F E
Sbjct:    3 RKLSIKLAINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHG-DRLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAETPVVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCE 182          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 71/165 (43.03%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  173 ETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            E L +A+D  +  DP V L G++ G   G ++ +KGL +KYG ERV D PI EA   GIGVGAA  GLKP+VE     FS  A+  I   AA+    S G  + PI+ R P G        HS+   A Y  + GLK + P +  D +GL  AA+  PDPVVF E
Sbjct:   11 EALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCPIIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFE 175          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 69/175 (39.43%), Postives = 100/175 (57.14%), Query Frame = 2
Query:  143 SSAVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            +  V  M + + L SA+D  +  D  V + G++VG + G ++ ++GL +KYG  RV D PI+E+G  G  VG   YGL+PVVE    ++   A D +I+ AA+  Y S+G   VP+  R P G     G  HSQ   A +  V GL+ + P +  DA+GLL A I + DPV+FLE
Sbjct:   11 AQTVTSMTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDFIVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLE 185          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 66/170 (38.82%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  158 QMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            QM + + +  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G  G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G        HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE
Sbjct:    3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLE 172          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 71/165 (43.03%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  173 ETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            E LN+A+D  +  D  V L G++ G   G ++ +KGL +KYG ERV D PI E    GIGVGAA  GLKP+VE     FS  A+  I   AA+    S G  + P+V R P G        HS+   A YA + GLK + P +  D +GL  AAI  PDPV+F E
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFE 174          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 65/177 (36.72%), Postives = 102/177 (57.63%), Query Frame = 2
Query:  152 VKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE-MSCY 679
            V+ + + + LN+ L + + ADPKV ++GE+VG   G +++++GL  ++G  RV+DTP+ EAG  G  +G A  G +PVVE     F     D I    AK     SG +S+P+V R P+G   G    H +   A++A   GL++++P +  DA  +++ AI   DPV+F E MS Y
Sbjct:   14 VQSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSMPVVIRIPHGGHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRY 190          
The following BLAST results are available for this feature:
BLAST of FC931940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CYACA1.360e-3743.02Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI9.743e-3644.85Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT2.171e-3544.85Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ACHLA3.831e-3241.82Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH1.115e-3138.67Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_MYCPN2.102e-3043.03Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEAE3.586e-3039.432-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODPB_BACST7.989e-3038.82Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCGE1.043e-2943.03Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_LEIXX1.780e-2936.72Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC34202G11EF PostHarveN Citrus clementina cDNA clone C34202G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931940 ID=FC931940; Name=FC931940; organism=Citrus clementina; type=EST; length=694bp
GGATAACTTTCACTTCTGGTAATCTCGGATTTTCATTGAAACAGAGTTGA
AGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCT
GTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGC
AGTTAAACAGATGATGGTGAGAGAGACTTTAAACTCTGCTCTTGATGAGG
AGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGGGAA
TATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCC
TGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTG
GAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCGTGACA
TTTAACTTCTCTATGCAGGCAATTGACCACATCATTAATTCTGCTGCAAA
ATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTTCAGAG
GGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGTTAC
GCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATACAG
TTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGGATC
CTGTTGTTTTTCTTGAAATGAGTTGTTATATGGTGAGTCATTCC
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