FC931946

Overview
NameFC931946
Unique NameFC931946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: CBR2_MOUSE (Carbonyl reductase [NADPH] 2 OS=Mus musculus GN=Cbr2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 59/202 (29.21%), Postives = 87/202 (43.07%), Query Frame = 1
Query:   82 SLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQL-AHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKDSTF 684
            +  G+ ALVTG  KGIG   V+ L A GA V   +R  ++L    +E       +     DL      EK +  +     G +++L+NNA   I +              + N  S + VSQ+ A  ++             +   +  P     +S+KGAM  LTK +A E    KIRVNSV P ++ T +  KV  D  F
Sbjct:    4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG----IEPVCVDLGDWDATEKALGGI-----GPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEF 196          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: SOU1_SCHPO (Sorbose reductase sou1 OS=Schizosaccharomyces pombe GN=sou1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 59/196 (30.10%), Postives = 90/196 (45.92%), Query Frame = 1
Query:   79 WSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTC-SRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPK-XXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAA--SSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPL 654
            +SLKG T L+TGG+ GIG+++ +  AA G+ V     RN+  L    +     G+Q    +C ++ R+   +       +  G L+++I NAG  IP              V+  N   AY+ +Q A    K            ++G IA      A+  ++K A+  L + LA EWA    RVNSV+P  I T L
Sbjct:    5 FSLKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQQWASYHATKAAVKHLARALAVEWA-PFARVNSVSPGYIDTDL 199          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 57/194 (29.38%), Postives = 89/194 (45.88%), Query Frame = 1
Query:   73 KRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRT 648
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  ++Q +   + +GL V+G  C +     RE+L+ T + +  G ++IL++NA    F                +  N ++   +++   P ++            +A     P  S    SK A+  LTK LA E A   IRVN +AP +I+T
Sbjct:    8 RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAT-AVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDK-TLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKT 199          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 57/194 (29.38%), Postives = 89/194 (45.88%), Query Frame = 1
Query:   73 KRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGT--FIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRT 648
            +R  L    ALVT  T GIG+A+   LA  GA V   SR +  ++Q +   + +GL V+G  C +     RE+L+ T + +  G ++IL++NA    F                +  N ++   +++   P ++            +A     P  S    SK A+  LTK LA E A   IRVN +AP +I+T
Sbjct:    8 RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAT-AVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDK-TLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKT 199          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: ARDH_PICST (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Pichia stipitis GN=ARDH PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 59/220 (26.82%), Postives = 95/220 (43.18%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQE---WKSKGL---------QVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQ-LAHPLLKXXXXXXXXXXXXVAGVIAI---PMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKDSTFLEQA 696
            L G  A++TGG+ G+   +   L A GA V     N        +E   W  + L         QVS  +C++      +    +++     + ++LIN AG                 +M  N   +++VSQ  A PL++            ++G I     P C    S  G ++ L ++LACEWAK  IRVN+++P  I TPL   V+   T +++A
Sbjct:   14 LDGRLAIITGGSGGLAAVISRALLAQGADVALIDMNLERTKSAAKEVLGWGEETLKGEHASAIGQVSAWSCNIGDAEAVDATFSSINEHHGKIADLLINTAGYCENFPAETYPATNAESIMKVNGLGSFYVSQSFARPLIQNNLRGSIILIGSMSGTIVNDPQPQCMYNMSKAGVIH-LVRSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKEA 232          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: FABG_HAEIN (3-oxoacyl-[acyl-carrier-protein] reductase OS=Haemophilus influenzae GN=fabG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 60/197 (30.46%), Postives = 88/197 (44.67%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKD 675
            ++G  ALVTG T+GIG A+ EEL++ GA V   + +E            KG  +  N  D   +   E L+E + + F G ++IL+NNAG                 +M TN  S YH+S+     +             V G    P  +   ++K  +   +K+LA E A   I VN VAP  I T + + VL D
Sbjct:    1 MQGKIALVTGSTRGIGRAIAEELSSKGAFVIGTATSEKGAEAISAYLGDKGKGLVLNVTD---KESIETLLEQIKNDF-GDIDILVNNAGITRDNLLMRMKDEEWFDIMQTNLTSVYHLSKAMLRSMMKKRFGRIINIGSVVGSTGNPGQTNYCAAKAGVVGFSKSLAKEVAARGITVNVVAPGFIATDMTE-VLTD 192          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: ACT3_STRCO (Putative ketoacyl reductase OS=Streptomyces coelicolor GN=actIII PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 53/194 (27.32%), Postives = 84/194 (43.30%), Query Frame = 1
Query:  100 ALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXV-----AGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKV 666
            ALVTG T GIG  +   L   G  V  C+R E  L   ++E +  G++  G  CD++   + E L+  V  ++ G +++L+NNAG                 V+ TN    + V++    +LK            V      G   +   +  ++SK  +   TK L  E A+  I VN+V P  + TP+   V
Sbjct:    9 ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY-GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTK---QVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASV 198          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 51/199 (25.63%), Postives = 95/199 (47.74%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHP-LLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKDS 678
            L G TAL+TG ++GIG  +    A  GA +     ++ E+ +   E   +G + +    D++  A  +  +   + + +G ++IL+NNAG                  +  N +  ++V++   P ++K               ++A P  +  A SK A+  LTK+LA E+A+  IRVN++ P  +RTP+ + + + S
Sbjct:    4 LTGKTALITGASQGIGEGIARVFARHGANLILLDISD-EIEKLADELGGRGHRCTAVKADVRDFASVQAAVAR-AKETEGRIDILVNNAGVCRLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQS 200          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 51/199 (25.63%), Postives = 95/199 (47.74%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHP-LLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKDS 678
            L G TAL+TG ++GIG  +    A  GA +     ++ E+ +   E   +G + +    D++  A  +  +   + + +G ++IL+NNAG                  +  N +  ++V++   P ++K               ++A P  +  A SK A+  LTK+LA E+A+  IRVN++ P  +RTP+ + + + S
Sbjct:    4 LTGKTALITGASQGIGEGIARVFARHGANLILLDISD-EIEKLADELGGRGHRCTAVKADVRDFASVQAAVAR-AKETEGRIDILVNNAGVCRLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQS 200          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: DCXR_BOVIN (L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 57/191 (29.84%), Postives = 86/191 (45.03%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQL-AHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPL 654
            L G  ALVTG  KGIG ++V+ L A GA V   SR + +L+  ++E       V     DL      E+ +  V     G +++L+NNA     +              + N  +   VSQ+ A  L+              A    +   S+  S+KGA++ LTK +A E    KIRVN+V P ++ TP+
Sbjct:    5 LAGRRALVTGAGKGIGRSIVKALHAAGARVVAVSRTQADLDSLVRECPG----VETVCVDLADWEATEQALGGV-----GPVDLLVNNAAVAFLQPFLEVTKEAYDMSFSVNLRAVIQVSQIVARGLIARGAPGVIVNVSSQASQRGLTNHSVYCSTKGALDTLTKVMAVELGPHKIRVNAVNPTVVMTPM 186          
The following BLAST results are available for this feature:
BLAST of FC931946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
CBR2_MOUSE3.671e-1229.21Carbonyl reductase [NADPH] 2 OS=Mus musculus GN=Cb... [more]
SOU1_SCHPO4.794e-1230.10Sorbose reductase sou1 OS=Schizosaccharomyces pomb... [more]
DHRS4_PONAB6.262e-1229.38Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN6.262e-1229.38Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
ARDH_PICST6.262e-1226.82D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
FABG_HAEIN1.068e-1130.463-oxoacyl-[acyl-carrier-protein] reductase OS=Haem... [more]
ACT3_STRCO1.395e-1127.32Putative ketoacyl reductase OS=Streptomyces coelic... [more]
UCPA_SALTY1.822e-1125.63Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI1.822e-1125.63Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
DCXR_BOVIN2.379e-1129.84L-xylulose reductase OS=Bos taurus GN=DCXR PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34202H05EF PostHarveN Citrus clementina cDNA clone C34202H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931946 ID=FC931946; Name=FC931946; organism=Citrus clementina; type=EST; length=729bp
GAGATAAGATAGGAATGGTTGCTTTTTGGCCTTCTAACCAATAGGGGGAA
AAAAATGTCAGATTTTAGGGAGAAAAGGTGGTCTCTCAAGGGTATGACGG
CCCTTGTCACAGGTGGAACCAAAGGGATCGGATATGCCGTAGTAGAAGAA
CTAGCAGCATTTGGAGCAATAGTTCATACATGTTCCCGTAACGAAACAGA
GCTCAATCAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTCAAGTGAGTG
GCAATGCATGTGACCTGAAAATTAGAGCTCAGCGAGAGAAGCTGATGGAG
ACTGTCTCGTCTCAATTTGATGGCATGCTCAACATCCTTATTAACAATGC
TGGAACCTTCATACCTAAGGAAACCACAGAATTTACCGAGGAGGATTTCT
CAACTGTAATGACTACCAATTTTGAGTCTGCTTATCATGTGTCTCAACTT
GCACACCCCCTCTTAAAATCATCAGGAAATGGAAACATCATATTTATATC
CTCTGTTGCAGGCGTTATTGCTATACCAATGTGTTCCATAGCAGCATCGA
GTAAAGGGGCGATGAATCAACTCACAAAGAACTTGGCATGCGAGTGGGCA
AAAGACAAAATTCGTGTGAATTCAGTTGCACCATGGATCATTAGAACCCC
ACTCATTGATAAAGTATTGAAAGATTCTACGTTTCTGGAACAAGCAATCG
CATGATACTCCGTACTCCTATCCCCGACC
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