FC931946

Overview
NameFC931946
Unique NameFC931946
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: Y0419_STAS1 (Uncharacterized oxidoreductase SSP0419 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0419 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 49/193 (25.39%), Postives = 92/193 (47.67%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNET---ELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPL 654
            L+   A+VTG + GIG ++ E LA  G  V    R+E+   E+ +RIQ+ K   ++ S    D+  + +  +L+E    +F G ++IL+N+AG  +              ++  N +   +      P +             ++G       ++ ++SK A++ +T+ L  E AK  +RV S++P ++ TPL
Sbjct:    4 LQDKVAVVTGASSGIGASIAETLANQGVKVVLTGRDESRLAEVAKRIQDNKQAVVETS--IVDVTHKEEVTELVEKTKEKF-GQIDILVNSAGLMLSSAITEGDVEAWEAMIDVNIKGTLYTINAVLPSMLNQSSGHIINIASISGFEVTKKSTLYSASKAAVHSITQGLEKELAKTGVRVTSISPGMVDTPL 193          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: PECR_HUMAN (Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sapiens GN=PECR PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 51/191 (26.70%), Postives = 83/191 (43.46%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWK-----SKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWII 642
            L+G  A+VTGG  GIG A+V+EL   G+ V   SR    L     E +     +K  +V    C+++   +   L+++    F G +N L+NN G                 V+ TN    +++ +  +                V      P+   + +++  +  LTK+LA EWA   IR+N VAP +I
Sbjct:   16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTF-GKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSW-MKEHGGSIVNIIVPTKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVI 204          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 61/198 (30.81%), Postives = 97/198 (48.99%), Query Frame = 1
Query:   79 WSLKGMTALVTGGTKGIGYAVVEELAAFGAIV----HTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDG-MLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLA-HPLLKXXXXXXXXXXXXVA--GVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRT 648
            +SLKG TALVTG   GIG  + + LA  GA +    HT S +ET+     Q  + +G   +    D+   ++ E + ++ +  F+   ++IL+NNAG    +            V+  N  S + ++QLA   +LK            ++  G I +P  +   +SK A+  LTK+ A EWA   I+VN++AP  I T
Sbjct:    8 FSLKGKTALVTGPGTGIGQGIAKALAGAGADIIGTSHTSSLSETQ-----QLVEQEGRIFTSFTLDM---SKPEAIKDSAAELFENRQIDILVNNAGIIHREKAEDFPEENWQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILVPAYT---ASKHAVAGLTKSFANEWAASGIQVNAIAPGYIST 194          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: DCXR_RAT (L-xylulose reductase OS=Rattus norvegicus GN=Dcxr PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 57/191 (29.84%), Postives = 84/191 (43.98%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQL-AHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPL 654
            L G  ALVTG  KGIG + V  L A GA V   SR   +L+  ++E       V     DL      E+ +  V     G +++L+NNA     +                NF +   VSQ+ A  ++              A   A+   ++  S+KGA++ LTK +A E    KIRVN+V P ++ TP+
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALQAAGAQVVAVSRTREDLDSLVRECPG----VEPVCVDLADWEATEQALSNV-----GPVDLLVNNAAVATLQPFLEVTKEACDTSFNVNFRAVVQVSQIVARGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTPM 186          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: ARDH_CANTR (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida tropicalis GN=ARD PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 57/215 (26.51%), Postives = 91/215 (42.33%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQR---IQEWKSKGL---------QVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQ-LAHPLLKXXXXXXXXXXXXVAGVIAI---PMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVLKDST 681
            L G   ++TGG+ G+   V   L A GA +     N     Q    + +W  + +         QVS  +C++      E   + ++     + ++LIN AG                 +M  N   +++VSQ  A PL++            ++G I     P C    S  G ++ L ++LACEWAK  IRVN+++P  I TPL   V+   T
Sbjct:   18 LDGKLVIITGGSGGLSAVVSRALLAKGADIALIDMNLERTQQAARDVLQWGEEQMKGKHESPIGQVSAWSCNIGDAEAVELTFKAINEHHGKVASVLINTAGYAENFPAEEYPAKNAENIMKVNGLGSFYVSQAFARPLIQNNMTGSIILIGSMSGTIVNDPQPQCMYNMSKAGVIH-LARSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHT 231          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: HDHA_ECOLI (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli (strain K12) GN=hdhA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 56/202 (27.72%), Postives = 82/202 (40.59%), Query Frame = 1
Query:   64 FREKRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVL 669
            F      L G  A++TG   GIG  +    A  GA V     N    N  + E +  G Q     CD+    +   L +   S+  G ++IL+NNAG   PK                N  S +H+SQL  P ++            +A        +  ASSK A + L +N+A +  +  IRVN +AP  I T  +  V+
Sbjct:    2 FNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNAGGGGPKPFDMPMADFRR-AYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI 201          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: HDHA_ECO57 (7-alpha-hydroxysteroid dehydrogenase OS=Escherichia coli O157:H7 GN=hdhA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 56/202 (27.72%), Postives = 82/202 (40.59%), Query Frame = 1
Query:   64 FREKRWSLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPLIDKVL 669
            F      L G  A++TG   GIG  +    A  GA V     N    N  + E +  G Q     CD+    +   L +   S+  G ++IL+NNAG   PK                N  S +H+SQL  P ++            +A        +  ASSK A + L +N+A +  +  IRVN +AP  I T  +  V+
Sbjct:    2 FNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL-GKVDILVNNAGGGGPKPFDMPMADFRR-AYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVI 201          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: YOXD_BACSU (Uncharacterized oxidoreductase yoxD OS=Bacillus subtilis GN=yoxD PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 53/184 (28.80%), Postives = 83/184 (45.11%), Query Frame = 1
Query:   82 SLKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAP 633
            SL+  TAL+TGG +GIG A    LA  G  +    R    + +  +E K+ G++ +  A D+K   Q  + +  V  Q  G ++ILINNAG                 ++  N    YHV++   P +              AG     + S  ++SK A+  LT++L  E  K  IRV+++ P
Sbjct:    3 SLQHKTALITGGGRGIGRATALALAKEGVNIGLIGRTSANVEKVAEEVKALGVKAAFAAADVKDADQVNQAVAQVKEQL-GDIDILINNAGISKFGGFLDLSADEWENIIQVNLMGVYHVTRAVLPEMIERKAGDIINISSTAGQRGAAVTSAYSASKFAVLGLTESLMQEVRKHNIRVSALTP 185          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: PECR_PONAB (Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo abelii GN=PECR PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 50/191 (26.18%), Postives = 85/191 (44.50%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWK-----SKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQLAHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWII 642
            L+G  A+VTGG  GIG A+V+EL   G+ V   SR    L     E +     +K  +V    C+++   +   L+++    F G +N L+NN G                 V+ TN    +++ +  +                V+    +P+   + +++  +  LTK+LA EWA   +R+N VAP +I
Sbjct:   16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAGELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDIF-GKINFLVNNGGGQFLSLAEHISSKGWHAVLETNLTGTFYMCKAVYSSW-MKEHGGSIVNIIVSIKTGLPLAVHSGAARAGVYNLTKSLALEWACSGVRINCVAPGVI 204          
BLAST of FC931946 vs. ExPASy Swiss-Prot
Match: DCXR_MOUSE (L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 56/191 (29.32%), Postives = 84/191 (43.98%), Query Frame = 1
Query:   85 LKGMTALVTGGTKGIGYAVVEELAAFGAIVHTCSRNETELNQRIQEWKSKGLQVSGNACDLKIRAQREKLMETVSSQFDGMLNILINNAGTFIPKXXXXXXXXXXXXVMTTNFESAYHVSQL-AHPLLKXXXXXXXXXXXXVAGVIAIPMCSIAASSKGAMNQLTKNLACEWAKDKIRVNSVAPWIIRTPL 654
            L G  ALVTG  KGIG + V  L A GA V   SR   +L+  ++E       V     DL      E+ +  V     G +++L+NNA   + +                N  +   VSQ+ A  ++              A   A+   ++  S+KGA++ LTK +A E    KIRVN+V P ++ TP+
Sbjct:    5 LAGRRALVTGAGKGIGRSTVLALKAAGAQVVAVSRTREDLDDLVRECPG----VEPVCVDLADWEATEQALSNV-----GPVDLLVNNAAVALLQPFLEVTKEACDTSFNVNLRAVIQVSQIVAKGMIARGVPGAIVNVSSQASQRALTNHTVYCSTKGALDMLTKMMALELGPHKIRVNAVNPTVVMTPM 186          
The following BLAST results are available for this feature:
BLAST of FC931946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
Y0419_STAS13.108e-1125.39Uncharacterized oxidoreductase SSP0419 OS=Staphylo... [more]
PECR_HUMAN3.108e-1126.70Peroxisomal trans-2-enoyl-CoA reductase OS=Homo sa... [more]
KDUD_BACSU3.108e-1130.812-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
DCXR_RAT3.108e-1129.84L-xylulose reductase OS=Rattus norvegicus GN=Dcxr ... [more]
ARDH_CANTR3.108e-1126.51D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
HDHA_ECOLI4.059e-1127.727-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
HDHA_ECO574.059e-1127.727-alpha-hydroxysteroid dehydrogenase OS=Escherichi... [more]
YOXD_BACSU6.923e-1128.80Uncharacterized oxidoreductase yoxD OS=Bacillus su... [more]
PECR_PONAB6.923e-1126.18Peroxisomal trans-2-enoyl-CoA reductase OS=Pongo a... [more]
DCXR_MOUSE6.923e-1129.32L-xylulose reductase OS=Mus musculus GN=Dcxr PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202H05EF PostHarveN Citrus clementina cDNA clone C34202H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931946 ID=FC931946; Name=FC931946; organism=Citrus clementina; type=EST; length=729bp
GAGATAAGATAGGAATGGTTGCTTTTTGGCCTTCTAACCAATAGGGGGAA
AAAAATGTCAGATTTTAGGGAGAAAAGGTGGTCTCTCAAGGGTATGACGG
CCCTTGTCACAGGTGGAACCAAAGGGATCGGATATGCCGTAGTAGAAGAA
CTAGCAGCATTTGGAGCAATAGTTCATACATGTTCCCGTAACGAAACAGA
GCTCAATCAAAGAATTCAAGAATGGAAGAGTAAGGGGCTTCAAGTGAGTG
GCAATGCATGTGACCTGAAAATTAGAGCTCAGCGAGAGAAGCTGATGGAG
ACTGTCTCGTCTCAATTTGATGGCATGCTCAACATCCTTATTAACAATGC
TGGAACCTTCATACCTAAGGAAACCACAGAATTTACCGAGGAGGATTTCT
CAACTGTAATGACTACCAATTTTGAGTCTGCTTATCATGTGTCTCAACTT
GCACACCCCCTCTTAAAATCATCAGGAAATGGAAACATCATATTTATATC
CTCTGTTGCAGGCGTTATTGCTATACCAATGTGTTCCATAGCAGCATCGA
GTAAAGGGGCGATGAATCAACTCACAAAGAACTTGGCATGCGAGTGGGCA
AAAGACAAAATTCGTGTGAATTCAGTTGCACCATGGATCATTAGAACCCC
ACTCATTGATAAAGTATTGAAAGATTCTACGTTTCTGGAACAAGCAATCG
CATGATACTCCGTACTCCTATCCCCGACC
back to top