FC931951

Overview
NameFC931951
Unique NameFC931951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10777 contig Ccv1_Contig10777:386..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: STHA_MARAV (Soluble pyridine nucleotide transhydrogenase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=sthA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 50/196 (25.51%), Postives = 86/196 (43.88%), Query Frame = 2
Query:  101 FDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG--QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGEEIVADVVLFATGRAPNTK 682
            F + ++LQ     I +   +  +  S   V L  G    V  + +E+      +  +  K  +IATGSR    P           SD  L+L   P+  ++ G G I  E+ASI+ G+G  VDL+      L   DDE+   ++ +L   G+ +      + +   +  + +    G++I AD  L+  GR+ NT+
Sbjct:   80 FSFPRVLQNAQKVIGKQVKLRTQFYSRNRVDLINGRAAFVDKHRLEIRGNKSVETIHF-KQAIIATGSRPYLPPDVDFRHHRIYNSDSILNLSHTPRTLIIYGAGVIGSEYASIFAGLGVKVDLINPGSRLLSFLDDEISDALSYHLRNNGVLVRHNEQYESVKGDDHGVVLSLQSGKKIRADAFLWCNGRSGNTE 274          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: STHA_ECOLC (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=sthA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 44/169 (26.04%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  191 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGEEIVADVVLFATGRAPNT 679
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++ + +    G+++ AD +L+A GR  NT
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFIIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNT 275          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: STHA_ECOHS (Soluble pyridine nucleotide transhydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=sthA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 44/169 (26.04%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  191 KLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAIT------SDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGEEIVADVVLFATGRAPNT 679
            ++ +G  + V  + + +   DG+  + +A+  +IA GSR    P    ++  T      SD  LS+   P+  ++ G G I  E+ASI+RGM   VDL+  ++  L   D EM   ++ +    G+ +      +++   ++ + +    G+++ AD +L+A GR  NT
Sbjct:  111 EILQGNARFVDEHTLALDCPDGSVETLTAEKFIIACGSR----PYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNT 275          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTR (Dihydrolipoyl dehydrogenase OS=Chlamydia trachomatis GN=lpdA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 53/228 (23.25%), Postives = 106/228 (46.49%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELA---ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGEEIVADVVLFATGRAPNTK 682
            P K L+ GA    ++  A  +G  V E    ++  ++Q+K   +  +      L+ +  + ++ G G ++   EV++  L        A  I++ATGS  +  P IP    +   + S   L+L+E+P++  ++GGG I  EFAS++  +GS V ++      L   + ++   +      +G+      ++  +    + ++ +T +G     D VL + GR  NT+
Sbjct:   49 PSKALLAGAEVVTQIRHADQFGIHV-EGFSINYPAMVQRKDSVVRSIRDGLNGLIRSNKITVFSGRGSLISSTEVKI--LGENPSVIKAHSIILATGSEPRAFPGIPFSAESPRILCSTGVLNLKEIPQKMAIIGGGVIGCEFASLFHTLGSEVSVIEASSQILALNNPDISKTMFDKFTRQGLRFVLEASVSNIEDIGDRVR-LTINGNVEEYDYVLVSIGRRLNTE 272          
The following BLAST results are available for this feature:
BLAST of FC931951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
STHA_MARAV8.446e-1125.51Soluble pyridine nucleotide transhydrogenase OS=Ma... [more]
STHA_ECOLC8.446e-1126.04Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
STHA_ECOHS8.446e-1126.04Soluble pyridine nucleotide transhydrogenase OS=Es... [more]
DLDH_CHLTR8.446e-1123.25Dihydrolipoyl dehydrogenase OS=Chlamydia trachomat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34202H10EF PostHarveN Citrus clementina cDNA clone C34202H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931951 ID=FC931951; Name=FC931951; organism=Citrus clementina; type=EST; length=701bp
GTGGTTGTGTCCCAAAAAGATATTGGTCTATGGAGCATCATTTGGAGGTG
AACTTGAGGATGCAAGGAGTTATGGATGGGAGGTACATGAGAAAATTGAC
TTCGACTGGAAAAAACTTCTGCAAAAGAAGACAGATGAAATACTCAGACT
AAATGGAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATG
AAGGGGAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTA
GATGGCACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGG
AAGTAGGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCT
CTGACGAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTT
GGTGGAGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGG
TTCTACTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTG
ATGATGAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATT
AATTTGCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGAG
TATAAAAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTAC
TCTTTGCCACTGGCAGGGCACCTAATACAAAAGGTTGAATTTGAAGCTGT
T
back to top