FC931951

Overview
NameFC931951
Unique NameFC931951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10777 contig Ccv1_Contig10777:386..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: TRXR2_MOUSE (Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 74/232 (31.90%), Postives = 116/232 (50.00%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVIT--DH--GEEIVA--DVVLFATGRAPNTK 682
            PKK++   A  GG + DA  YGWEV + +  +WK + +   + +  LN  ++  L +  VK +  +   V  + V      G     SA+HI+IATG R +    + G  E  ITSD+   L+E P + +V+G  Y+A+E A    G+G    ++ R  +PLRGFD +M ++V  ++E  G           + K   +   +T  DH  G+E     D VL+A GR P T+
Sbjct:   93 PKKLMHQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMR-SIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR 323          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: TRXR1_DROME (Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 75/226 (33.19%), Postives = 121/226 (53.54%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVI----TDHGEEI--VADVVLFATGR 667
            PKK++   +  G  + +A +YGW V EKI  DW KL+Q   + I  +N + +  L +  V+   G G  V  + + + +L   + + +A+  +IA G R +   IPG  E  ITSD+  SL+  P + +V+G GYI +E A   +G+G    ++ R  + LRGFD +M  +VA ++E RGI    +T    + K ++   ++     + GEE   V D VL+A GR
Sbjct:  169 PKKLMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTL-LAKLKSGERTITAQTFVIAVGGRPRYPDIPGAVEYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEEAEDVYDTVLWAIGR 392          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: GSHR_ECOLI (Glutathione reductase OS=Escherichia coli (strain K12) GN=gor PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 71/223 (31.84%), Postives = 111/223 (49.78%), Query Frame = 2
Query:   11 PKKILVYGASFGGELED-ARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEE-SIKVITDHGEEIVADVVLFATGRAP 673
            PKK++ + A     +      YG++      F+W+ L+  +T  I R++  Y+ +L    V + +G  + V    +EV   +G  ++  A HILIATG R     IPG E  I SD   +L  LP+R  V+G GYIAVE A +  G+G+   L  RK  PLR FD  +   +   +   G  LH     K ++K+ + S+ +  + G     D +++A GR P
Sbjct:   49 PKKVMWHAAQIREAIHMYGPDYGFDTTIN-KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV---NGETIT--ADHILIATGGRPSHPDIPGVEYGIDSDGFFALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREP 265          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 75/234 (32.05%), Postives = 117/234 (50.00%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTT---IKELIKS-EESIKVITDHGE-----EIVADVVLFATGRAPNTK 682
            PKK++   A  G  L+DA+ YGWE ++++  +W+ + +     I  LN  Y+  L   GV      G+ V  ++++ T   G +  Y+A   +IATG R +   I G +E  ITSD+  SL   P   +V+G  Y+ +E A    G+G  V ++ R  L LRGFD EM   V   LE +G+    + T   +++L K     +KV+    E     E + + VL A GR   T+
Sbjct:  264 PKKLMHQAALLGHALQDAKKYGWEYNQQVKHNWEAMTEAIQSHIGSLNWGYRVTLREKGVTYVNSFGEFVDLHKIKATNKKGQETFYTASKFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGCTLVVGASYVGLECAGFLAGLGLDVTVMVRSVL-LRGFDQEMAEKVGSYLEQQGVKFQRKFTPILVQQLEKGLPGKLKVVAKSTEGPETVEGIYNTVLLAIGRDSCTR 496          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: TRXR2_HUMAN (Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.136e-23
Identity = 74/235 (31.49%), Postives = 120/235 (51.06%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQ-RAPIPGQ-ELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINL---HPRTTIKEL------IKSEESIKVITDHGEEIVADVVLFATGRAPNTK 682
            PKK++   A  GG ++DA +YGWEV + +  DW+K+ +   + +  LN  ++  L +  VK +  +   V  + V      G ++  SA HI+IATG R +    I G  E  ITSD+   L+E P + +V+G  Y+A+E A    G+G    ++ R  +PLRGFD +M ++V  ++   G         + ++ L      +  E+S     D G     D VL+A GR P+T+
Sbjct:   93 PKKLMHQAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYPTHIEGALEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTIMMR-SIPLRGFDQQMSSMVIEHMASHGTRFLRGCAPSRVRRLPDGQLQVTWEDSTTGKEDTG---TFDTVLWAIGRVPDTR 323          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_ACHLA (Dihydrolipoyl dehydrogenase (Fragment) OS=Acholeplasma laidlawii GN=pdhD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.306e-23
Identity = 71/232 (30.60%), Postives = 117/232 (50.43%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE------LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGE-EIVADVVLFATGRAPNTKG 685
            P K  +  A     ++ +  +G     ++ FDW K++ +K   + +L      LL   GV +Y G G I   NEV V   +G  L    K+++IATGS A   PIPG +      + +TS E L+++  PK  V++GGG I VEFA+++   GS V ++   +  L   DD++R   A+ L+  GI +  +  +K++   +  +    D  E  I  D++L + G   N+KG
Sbjct:   49 PTKTFLKSAKVFNTVKKSMDFGVSTSGEVGFDWSKIVSRKDGVVKQLTNGVAFLLKKNGVDVYNGFGDIKSANEVVV---NGESLK--TKNVIIATGSSAVVPPIPGVKEAYEKGIVVTSRELLNVKNYPKSIVIVGGGVIGVEFATVFNSFGSKVTIIEMMDGILPTMDDDIRVAYAKTLKRDGIEILTKAEVKKV--DDHKVTYSLDGKETTIEGDLILMSVGTRANSKG 273          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 74/234 (31.62%), Postives = 116/234 (49.57%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPR---TTIKELIK-SEESIKVITDHGE-----EIVADVVLFATGRAPNTK 682
            PKK++   A  G  L D+R +GWE ++++  +W+ + +   + I  LN  Y+  L    V      G+ V  ++++ T   G +  Y+A   +IATG R +   I G +E  ITSD+  SL   P + +V+G  Y+A+E A    G G  V ++ R  L LRGFD EM   V   +E  G+    +     +++L K S   +KV+    E     E V + VL A GR   T+
Sbjct:  321 PKKLMHQAALLGQALCDSRKFGWEYNQQVRHNWETMTKAIQNHISSLNWGYRLSLREKAVAYVNSYGEFVEHHKIKATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGFGLDVTVMVRSIL-LRGFDQEMAEKVGSYMEQHGVKFLRKFIPVMVQQLEKGSPGKLKVLAKSTEGTETIEGVYNTVLLAIGRDSCTR 553          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: GSHR_RAT (Glutathione reductase (Fragment) OS=Rattus norvegicus GN=Gsr PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 78/242 (32.23%), Postives = 122/242 (50.41%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIV-GPNEVEVTQLDGTKLSYSAKHILIATG---SRAQRAPIPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRG----INLHPRTTIKELIKSEESIK---VITDHGEEIV------ADVVLFATGRAPNTKG 685
            PKK++   A     + D   YG++ + K  F+W  + +K+   + RLN IY+  L+ + +++  G      GP      +++G K  ++A HILIATG   +      IPG  L ITSD    LE+LP R+V++G GYIAVE A I   +GS   L+ R +  LR FD  + +     LE  G    + +   + +KE+ K+   ++   V    G +         D +L+A GR PN+KG
Sbjct:    7 PKKVMWNTAVHSEFIHDHVDYGFQ-NCKSKFNWHVIKEKRDAYVSRLNNIYQNNLTKSHIEVIHGYATFRDGPQPT--AEVNGKK--FTAPHILIATGGVPTVPHENQIPGASLGITSDGFFQLEDLPSRSVIVGAGYIAVEIAGILSALGSKTSLMIRHDKVLRSFDSLISSNCTEELENAGGVEVLTVKKFSQVKEVKKTSSGLELHVVTALPGRKPTVTTIPDVDCLLWAIGRDPNSKG 243          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH1_ARATH (Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.774e-22
Identity = 69/233 (29.61%), Postives = 117/233 (50.21%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDA-RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGEE-----IVADVVLFATGRAPNTKG 685
            P K L++ +    E + +  ++G +V   ++ D   +L +K + +  L    + L     V   +G GK + PNEV V  +DG       KHI++ATGS  +  P     ++  ++S  ALSL E+PK+ +V+G GYI +E  S+W  +GS V ++      +   D E+R    R+LE + +    +T +  +  S + +K+  +  E      + ADVVL + GR P T G
Sbjct:   89 PSKALLHSSHMYHEAKHSFANHGIKV-SSVEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQSILEADVVLVSAGRTPFTSG 320          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH2_ARATH (Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.064e-21
Identity = 69/233 (29.61%), Postives = 117/233 (50.21%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDA-RSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGE-----EIVADVVLFATGRAPNTKG 685
            P K L++ +    E +    ++G +V   ++ D   +L +K   +  L    + L     V   +G GK + P+EV V  +DG  +    KHI++ATGS  +  P     ++  ++S  ALSL E+PK+ +V+G GYI +E  S+W  +GS V ++      +   D E+R    R+LE + +    +T +  +  S + +K+I +  E      + ADVVL + GR P T G
Sbjct:   89 PSKALLHSSHMYHEAKHVFANHGVKV-SSVEVDLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGEQTTLEADVVLVSAGRTPFTSG 320          
The following BLAST results are available for this feature:
BLAST of FC931951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
TRXR2_MOUSE1.753e-2431.90Thioredoxin reductase 2, mitochondrial OS=Mus musc... [more]
TRXR1_DROME1.753e-2433.19Thioredoxin reductase 1, mitochondrial OS=Drosophi... [more]
GSHR_ECOLI8.700e-2431.84Glutathione reductase OS=Escherichia coli (strain ... [more]
TRXR3_MOUSE1.136e-2332.05Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
TRXR2_HUMAN1.136e-2331.49Thioredoxin reductase 2, mitochondrial OS=Homo sap... [more]
DLDH_ACHLA3.306e-2330.60Dihydrolipoyl dehydrogenase (Fragment) OS=Acholepl... [more]
TRXR3_HUMAN4.774e-2231.62Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GSHR_RAT4.774e-2232.23Glutathione reductase (Fragment) OS=Rattus norvegi... [more]
DLDH1_ARATH4.774e-2229.61Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Ar... [more]
DLDH2_ARATH1.064e-2129.61Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC34202H10EF PostHarveN Citrus clementina cDNA clone C34202H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931951 ID=FC931951; Name=FC931951; organism=Citrus clementina; type=EST; length=701bp
GTGGTTGTGTCCCAAAAAGATATTGGTCTATGGAGCATCATTTGGAGGTG
AACTTGAGGATGCAAGGAGTTATGGATGGGAGGTACATGAGAAAATTGAC
TTCGACTGGAAAAAACTTCTGCAAAAGAAGACAGATGAAATACTCAGACT
AAATGGAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATG
AAGGGGAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTA
GATGGCACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGG
AAGTAGGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCT
CTGACGAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTT
GGTGGAGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGG
TTCTACTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTG
ATGATGAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATT
AATTTGCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGAG
TATAAAAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTAC
TCTTTGCCACTGGCAGGGCACCTAATACAAAAGGTTGAATTTGAAGCTGT
T
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