FC931951

Overview
NameFC931951
Unique NameFC931951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10777 contig Ccv1_Contig10777:386..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: MERA_BACCE (Mercuric reductase OS=Bacillus cereus GN=merA PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 66/196 (33.67%), Postives = 104/196 (53.06%), Query Frame = 2
Query:  104 DWKKLLQKKTDEILRL-NGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKV---ITDHGEEIVADVVLFATGRAP 673
            D   L+++K D +  + N  Y  L+ + G +L +GE K V  N VEV   +G +++  AK  LIATG+ +    IPG +    +TS   L L+++P R  V+G GYI +E   ++  +GS V L+ R E  L+ +D E+   + + L  +GINL    T + + +  +  KV   I      I A+ +L ATGR P
Sbjct:  244 DLAPLVKQKNDLVTEMRNEKYVNLIDDYGFELIKGESKFVNENTVEV---NGNQIT--AKRFLIATGASSTAPNIPGLDEVDYLTSTSLLELKKVPNRLTVIGSGYIGMELGQLFHNLGSEVTLIQRSERLLKEYDPEISEAITKALTEQGINLVTGATYERVEQDGDIKKVHVEINGKKRIIEAEQLLIATGRKP 434          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_STAAW (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=pdhD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITD-HGEE--IVADVVLFATGRAPNT 679
            P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++  +KV  +  GEE  I AD VL   GR PNT
Sbjct:   54 PSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNT 278          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_STAAU (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus GN=pdhD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITD-HGEE--IVADVVLFATGRAPNT 679
            P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++  +KV  +  GEE  I AD VL   GR PNT
Sbjct:   54 PSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNT 278          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_STAAS (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=pdhD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITD-HGEE--IVADVVLFATGRAPNT 679
            P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++  +KV  +  GEE  I AD VL   GR PNT
Sbjct:   54 PSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNT 278          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_STAAR (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=pdhD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITD-HGEE--IVADVVLFATGRAPNT 679
            P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++  +KV  +  GEE  I AD VL   GR PNT
Sbjct:   54 PSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNT 278          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_STAAN (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain N315) GN=pdhD PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITD-HGEE--IVADVVLFATGRAPNT 679
            P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++  +KV  +  GEE  I AD VL   GR PNT
Sbjct:   54 PSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNT 278          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_STAAM (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhD PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITD-HGEE--IVADVVLFATGRAPNT 679
            P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++  +KV  +  GEE  I AD VL   GR PNT
Sbjct:   54 PSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNT 278          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_STAAC (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain COL) GN=pdhD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.940e-19
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITD-HGEE--IVADVVLFATGRAPNT 679
            P K L++ +    E + + + G  + E +  +++K+ + K+  + +L G  + LL    V + +GE   V  N + V   + +  +Y+ K+ +IATGSR    P     +  I S  AL+L+E+P + VV+GGGYI  E  + +   GS V +L   +  L GF+ +M   V + ++ +G+ +      K   +++  +KV  +  GEE  I AD VL   GR PNT
Sbjct:   54 PSKALLHASHRFVEAQHSENLG-VIAESVSLNFQKVQEFKSSVVNKLTGGVEGLLKGNKVNIVKGEAYFVDNNSLRVMD-EKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGALNLQEVPGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGVEIVTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVLVTVGRRPNT 278          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.427e-19
Identity = 77/234 (32.91%), Postives = 115/234 (49.15%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSY------GWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPI-PGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGE--EIVADVVLFATGRAPNTKG 685
            P K L++ A    E   AR Y      G +V      D  + ++ K   + RL      LL   GV + +G  +I+    V V    G       +H+L+A GS++   PI P     I+S EAL+   LPKR VV+GGGYI +E  + +R +G  V ++  +   L G+D+E+   VA+ L   G+ L+   ++  L  SE  ++V    GE  EI AD VL A GR P ++G
Sbjct:   51 PSKALIHAAE---EYLKARHYASRSALGIQVQAP-SIDIARTVEWKDAIVDRLTSGVAALLKKHGVDVVQGWARILDGKSVAVELAGGGSQRIECEHLLLAAGSQSVELPILPLGGKVISSTEALAPGSLPKRLVVVGGGYIGLELGTAYRKLGVEVAVVEAQPRILPGYDEELTKPVAQALRRLGVELYLGHSL--LGPSENGVRVRDGAGEEREIAADQVLVAVGRKPRSEG 278          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: TRXR1_CAEEL (Thioredoxin reductase 1 OS=Caenorhabditis elegans GN=trxr-1 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.101e-18
Identity = 57/182 (31.32%), Postives = 88/182 (48.35%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHE-KIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG-QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGI 550
            PKK++   +  G  + DA+ YGW++ E K++  W  L     D I  LN  Y+  L    V      G+  GP E+  T         +A   LI+TG R +   IPG +E  ITSD+   L   P + + +G  Y+++E A    G G  V ++ R  L LRGFD +M   + +++   G+
Sbjct:  226 PKKLMHQASLLGHSIHDAKKYGWKLPEGKVEHQWNHLRDSVQDHIASLNWGYRVQLREKTVTYINSYGEFTGPFEISATNKKKKVEKLTADRFLISTGLRPKYPEIPGVKEYTITSDDLFQLPYSPGKTLCVGASYVSLECAGFLHGFGFDVTVMVRSIL-LRGFDQDMAERIRKHMIAYGM 406          
The following BLAST results are available for this feature:
BLAST of FC931951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
MERA_BACCE4.940e-1933.67Mercuric reductase OS=Bacillus cereus GN=merA PE=1... [more]
DLDH_STAAW4.940e-1929.96Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAU4.940e-1929.96Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAS4.940e-1929.96Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAR4.940e-1929.96Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAN4.940e-1929.96Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAM4.940e-1929.96Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAC4.940e-1929.96Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH1_PSEAE8.427e-1932.91Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
TRXR1_CAEEL1.101e-1831.32Thioredoxin reductase 1 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionC34202H10EF PostHarveN Citrus clementina cDNA clone C34202H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931951 ID=FC931951; Name=FC931951; organism=Citrus clementina; type=EST; length=701bp
GTGGTTGTGTCCCAAAAAGATATTGGTCTATGGAGCATCATTTGGAGGTG
AACTTGAGGATGCAAGGAGTTATGGATGGGAGGTACATGAGAAAATTGAC
TTCGACTGGAAAAAACTTCTGCAAAAGAAGACAGATGAAATACTCAGACT
AAATGGAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATG
AAGGGGAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTA
GATGGCACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGG
AAGTAGGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCT
CTGACGAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTT
GGTGGAGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGG
TTCTACTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTG
ATGATGAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATT
AATTTGCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGAG
TATAAAAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTAC
TCTTTGCCACTGGCAGGGCACCTAATACAAAAGGTTGAATTTGAAGCTGT
T
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