FC931951

Overview
NameFC931951
Unique NameFC931951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10777 contig Ccv1_Contig10777:386..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_ZYMMO (Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis GN=lpd PE=3 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 63/205 (30.73%), Postives = 105/205 (51.22%), Query Frame = 2
Query:    2 WLC-PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP---IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESI 604
            W C P K L+  A    E+++A +YG     K DFD  K++ +  +   RL    K LL    V++  G G++ G  ++ V   +G +    AK I+IATG+RA++ P     G+ +  T   AL    +PK+ +V+G G I +EFAS +   G+ V ++      L   D E+ A VA+  + RGI +  ++ ++ L   +E +
Sbjct:   45 WGCIPTKSLLRSAEVYHEMQNAEAYGLTSF-KPDFDLDKIIARSREVATRLASGVKTLLRKNKVEVISGVGQLTGNQQMLVETTEGEEKILEAKDIIIATGARARQLPNVHSDGKHIW-TYHHALKPPAMPKKLLVIGSGAIGIEFASFYADFGAEVSIVEHAPQILPMEDAEVSAYVAKAFKKRGIRILTQSALQNLTPDDEGV 247          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_CANFA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Canis familiaris GN=DLD PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 67/220 (30.45%), Postives = 107/220 (48.64%), Query Frame = 2
Query:   56 EDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHG------EEIVADVVLFATGRAPNTK 682
            +D  S G E+ E +  + +K++++K+  +  L G    L     V    G GKI G N+V   + DG+      K+ILIATGS     P PG    ++  ++S  ALSL+++P++ VV+G G I VE  S+W+ +G+ V  + F   +   G D E+     R L+ +G      T +    K  +    ++  G      E I  DV+L   GR P T+
Sbjct:  104 KDFASRGIEMSE-VRLNLEKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTAKKADGSTQVIDTKNILIATGSEV--TPFPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEGASGGKAEVITCDVLLVCIGRRPFTQ 320          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: STHA_COLP3 (Soluble pyridine nucleotide transhydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=sthA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 55/166 (33.13%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  188 VKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITDHGEEIVADVVLFATGRAPNT 679
            V+  +G+   +  + + ++  DG+    SAK I+IATGSR  R      +      SD  LSL+  P+  ++ G G I  E+ASI+RG+G  VDL+  +E  L   D EM   ++ +L   G+ +     I+ +  SE+++ V    G+++ AD +LFA GR  NT
Sbjct:  110 VEHIQGQASFIDAHTISISHPDGSVEKISAKQIMIATGSRPYRPDDIDFDHPRVYDSDSILSLKHAPQHVIIYGAGVIGSEYASIFRGLGVKVDLINTRERLLSFLDTEMSDSLSYHLWNSGVVIRHGEEIERVESSEDAVIVHLKSGKKMRADCLLFANGRTGNT 275          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: MERA_STAES (Mercuric reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=merA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 60/179 (33.52%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  161 YKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKV-ITDHGEE--IVADVVLFATGRAPNTK 682
            Y  L+   G  L  GE   +    ++V   + T  S+     LIATG+      IPG      +TS  AL L+E+P+R  V+G GYIA E   ++  +G+ V L+ R E   + +D E+   +  +L  +G+NL    T +++ ++ +S  + I  +G+E  I AD VL ATGR PNT+
Sbjct:  180 YIDLIEEYGFDLIRGEASFIDDKTIQVNGQNITSKSF-----LIATGASPAVPEIPGMNEVDYLTSTSALELKEVPQRLAVIGSGYIAAELGQMFHNLGTEVTLMQRSERLFKTYDPEISEAIDESLTEQGLNLITGVTYQKVEQNGKSTSIYIEVNGQEQVIEADQVLVATGRKPNTE 353          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: MERA_STAAU (Mercuric reductase OS=Staphylococcus aureus GN=merA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 60/179 (33.52%), Postives = 94/179 (52.51%), Query Frame = 2
Query:  161 YKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPGQELA--ITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKV-ITDHGEE--IVADVVLFATGRAPNTK 682
            Y  L+   G  L  GE   +    ++V   + T  S+     LIATG+      IPG      +TS  AL L+E+P+R  V+G GYIA E   ++  +G+ V L+ R E   + +D E+   +  +L  +G+NL    T +++ ++ +S  + I  +G+E  I AD VL ATGR PNT+
Sbjct:  180 YIDLIEEYGFDLIRGEASFIDDKTIQVNGQNITSKSF-----LIATGASPAVPEIPGMNEVDYLTSTSALELKEVPQRLAVIGSGYIAAELGQMFHNLGTEVTLMQRSERLFKTYDPEISEAIDESLTEQGLNLITGVTYQKVEQNGKSTSIYIEVNGQEQVIEADQVLVATGRKPNTE 353          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_PSEFL (Dihydrolipoyl dehydrogenase OS=Pseudomonas fluorescens GN=lpd PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 59/200 (29.50%), Postives = 102/200 (51.00%), Query Frame = 2
Query:   95 IDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSR-AQRAPIP-GQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGIN--LHPRTTIKELIKSEESIKVITDHGEE-IVADVVLFATGRAPNT 679
            +  D   ++ +K + +  L G    L    GV  +EG GK++   +VEVT LDG      A++++IA+GSR  +  P P   ++ + S  AL  + +PK+  V+G G I +E  S+W  +G+ V +L   +  L   D+++     + L  +G+N  L  R T  E+ K + ++     +GE+    D ++ A GR P T
Sbjct:   84 VTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEGHGKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALEFQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQGLNIRLGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVT 283          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_MANSE (Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 74/221 (33.48%), Postives = 113/221 (51.13%), Query Frame = 2
Query:   59 DARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLL-FRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKV--ITDHG------EEIVADVVLFATGRAPNTK 682
            D +  G E  E + F++K ++  K + +  L G    L     VKL  G G IV PN+VEV    G + + + K+ILIATGS     P PG    ++  ITS  ALSLE +PK+ +V+G G I +E  S+++ +G+ V  + F   +   G D E+ +   R L  +G+     T +  + K   ++KV  ++  G      E +  DVVL + GR P TK
Sbjct:   93 DFKHRGIETGE-VKFNFKAMMDYKVNAVKALTGGIAMLFQKNKVKLVRGAGTIVAPNKVEVKGEKGVE-TVNTKNILIATGSEV--TPFPGVTFDEKQIITSTGALSLESVPKKMLVIGAGVIGLELGSVYQRLGADVTAIEFLGSIGGIGIDMEV-SKDYRILAKQGMKFKLETKVLGVKKEGSTVKVEDVSIEGAKGGNKETMDCDVVLISIGRRPYTK 308          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 71/232 (30.60%), Postives = 117/232 (50.43%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVT---QLDGTKLSYSAKHILIATGSRAQRAP--IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVI--TDHGE--EIVADVVLFATGRAPNT 679
            P K L+ GA+   E  +A   G  +H     D  +L   K+  + +L G  ++L    GV L EG  +    N V +    +  G++ +   +H +IATGSR  + P    G E   +S +AL  + +P+R VV+GGGYI +E ++ +  +G+ V ++   +  L G++ ++  VV +  E  GI++H         + ++ I V   T+ GE  E  AD VL A GR+P T
Sbjct:   54 PSKALITGANLAHEAGNAEEMG--IHADPVVDMSQLRDWKSGVVDQLTGGVEKLCKANGVNLVEGTARFKDENAVRIAHGGEGQGSE-TIEFEHCIIATGSRVIQIPGFDFGDEPVWSSRDALEADTVPERLVVVGGGYIGMELSTTFAKLGADVTVVEMLDDILPGYESDVARVVRKRAEELGIDMHLGEGATGWREEDDGIMVTTETEDGEENEYRADKVLVAVGRSPVT 282          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEPU (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putida GN=lpd3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.076e-17
Identity = 69/238 (28.99%), Postives = 116/238 (48.74%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKID----FDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAPIPG----QELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKVITD-----HGEEIVADVVLFATGRAPNTKG 685
            P K L++ +    EL +A S     H  I+     +  +++++K + +  L    + L     V   +G G++ G  +V V   DG++ +  AK I+IATGS  +  P+PG     +  I S  ALSL ++PK  VV+G G I +E  S+WR +GS V ++   +    G D E    + + L  +G+     + + +   S + + ++ +       E + AD VL A GR P TKG
Sbjct:   49 PSKALLHAS----ELYEAASGDEFAHLGIEVKPTLNLAQMMKQKDESVTGLTKGIEYLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETALQAKDIVIATGS--EPTPLPGVTIDNQRIIDSTGALSLPQVPKHLVVIGAGVIGLELGSVWRRLGSQVTVIEYLDRICPGTDTETAKTLQKALAKQGMVFKLGSKVTQATASADGVSLVLEPAAGGTAESLQADYVLVAIGRRPYTKG 280          
BLAST of FC931951 vs. ExPASy Swiss-Prot
Match: DLDH_CHLPN (Dihydrolipoyl dehydrogenase OS=Chlamydia pneumoniae GN=lpdA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 62/225 (27.56%), Postives = 112/225 (49.78%), Query Frame = 2
Query:   11 PKKILVYGASFGGELEDARSYGWEVHEKIDFDWKKLLQKKTDEILRLNGIYKRLLSNAGVKLYEGEGKIVGPNEVEVTQLDGTKLSYSAKHILIATGSRAQRAP-IPGQELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGSTVDLLFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTTIKELIKSEESIKV-ITDHGEEIVADVVLFATGRAPNT 679
            P K L+ GA+    ++ A  +G  V +    D+  + ++K   +  +    + L+ +  + + +G G +V   EV+V   D T +   A HI++ATGS  +  P +P     ++S   L LE LPK+  ++GGG I  EFAS++  +G  + ++   +  L   + E+   V      +GI +  + +I  + +S+  +++ + D  EE   D VL A GR  NT
Sbjct:   49 PSKALIAGANVVSHIKHAEQFGIHV-DGYTIDYPAMAKRKNTVVQGIRQGLEGLIRSNKITVLKGTGSLVSSTEVKVIGQDTTIIK--ANHIILATGSEPRPFPGVPFSSRILSSTGILELEVLPKKLAIIGGGVIGCEFASLFHTLGVEITVIEALDHILAVNNKEVSQTVTNKFTKQGIRILTKASISAIEESQNQVRITVNDQVEEF--DYVLVAIGRQFNT 268          
The following BLAST results are available for this feature:
BLAST of FC931951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
DLDH_ZYMMO1.217e-1730.73Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis G... [more]
DLDH_CANFA1.217e-1730.45Dihydrolipoyl dehydrogenase, mitochondrial OS=Cani... [more]
STHA_COLP32.076e-1733.13Soluble pyridine nucleotide transhydrogenase OS=Co... [more]
MERA_STAES2.076e-1733.52Mercuric reductase OS=Staphylococcus epidermidis (... [more]
MERA_STAAU2.076e-1733.52Mercuric reductase OS=Staphylococcus aureus GN=mer... [more]
DLDH_PSEFL2.076e-1729.50Dihydrolipoyl dehydrogenase OS=Pseudomonas fluores... [more]
DLDH_MANSE2.076e-1733.48Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 ... [more]
DLDH_HALVO2.076e-1730.60Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
DLDH3_PSEPU2.076e-1728.99Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putid... [more]
DLDH_CHLPN2.711e-1727.56Dihydrolipoyl dehydrogenase OS=Chlamydia pneumonia... [more]

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Properties
Property NameValue
Genbank descriptionC34202H10EF PostHarveN Citrus clementina cDNA clone C34202H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931951 ID=FC931951; Name=FC931951; organism=Citrus clementina; type=EST; length=701bp
GTGGTTGTGTCCCAAAAAGATATTGGTCTATGGAGCATCATTTGGAGGTG
AACTTGAGGATGCAAGGAGTTATGGATGGGAGGTACATGAGAAAATTGAC
TTCGACTGGAAAAAACTTCTGCAAAAGAAGACAGATGAAATACTCAGACT
AAATGGAATTTACAAGCGATTATTATCTAATGCTGGGGTAAAATTATATG
AAGGGGAGGGAAAGATAGTTGGTCCAAATGAAGTTGAGGTCACACAACTA
GATGGCACTAAGTTAAGTTACTCAGCAAAGCACATATTGATCGCAACTGG
AAGTAGGGCTCAACGTGCTCCTATTCCTGGCCAGGAGCTGGCTATAACCT
CTGACGAGGCATTGAGCTTGGAAGAATTACCCAAGCGTGCTGTGGTGCTT
GGTGGAGGGTACATTGCTGTTGAGTTTGCTTCCATATGGCGAGGGATGGG
TTCTACTGTGGATCTATTATTTAGAAAGGAACTTCCATTAAGAGGGTTTG
ATGATGAAATGCGGGCAGTAGTTGCCAGAAATCTGGAAGGGAGGGGAATT
AATTTGCACCCGAGGACTACCATAAAGGAGTTGATTAAGTCAGAGGAGAG
TATAAAAGTTATTACAGATCATGGTGAAGAGATTGTTGCAGATGTTGTAC
TCTTTGCCACTGGCAGGGCACCTAATACAAAAGGTTGAATTTGAAGCTGT
T
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