FC931954

Overview
NameFC931954
Unique NameFC931954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 380.563 bits (976), Expect = 4.357e-105
Identity = 189/229 (82.53%), Postives = 207/229 (90.39%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E +DQN  IVGSTTGSNY VRILST++RELLKPSASVAL RHSNALVD+LPPEADSSIS+L   E+PDV+Y D+GG D+QKQE+REAVELPLT  +LY+QIGIDPPRGVLLYGPPGTGKT+L KAVAN T A FIRVVGSEFVQKYLGEGPRMVRDVFR+A+ENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELL QMDGFDQ  NVKVIMA NR DTLD
Sbjct:   59 GQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKYLGEGPRMVRDVFRMARENAPAIIFIDEIDAIATKRFDAQTGADREVQRILIELLTQMDGFDQGANVKVIMATNRADTLD 287
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 5.691e-105
Identity = 193/229 (84.28%), Postives = 208/229 (90.83%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQ +EMVD N GIV ST+GS   VRILSTI+RELLKPSASVAL RHSNALVD LPPE+DSSI LL   EKP  +Y+DIGG DIQKQE+REAVELPLTHH LYKQIGIDPPRGVLLYGPPGTGKT+LAKAVA+HT+AAFIRVVGSEFVQKYLGEGPR+VRDVFRLA+EN+PAIIFIDE+DAIAT RFDAQTGADREVQRILMELLNQMDGFD +VNVKVIMA NR DTLD
Sbjct:   75 GQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLD 303
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.550e-102
Identity = 184/229 (80.35%), Postives = 207/229 (90.39%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E +DQN GIV STTG +Y VRILST++RELLKPS SVALHRHSNALVD+LPP++DSSIS++ ++EKPDVTY D+GG D+QKQEIREAVELPL   +LY+QIGIDPPRGVLLYGPPGTGKT+L KAVAN T AAFIRV GSEFV KYLGEGPRMVRDVFRLA+ENAP+IIFIDEVD+IAT RFDAQTG+DREVQRIL+ELL QMDGFDQ+ NVKVIMA NR DTLD
Sbjct:   97 GQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 9.729e-97
Identity = 170/229 (74.24%), Postives = 198/229 (86.46%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E +D +  IVGST GSN+ VRILST++RELLKP+ +VALHRHS+A+V VLPPE DS+I ++ +SEKP VTY D+GG D+QKQEI+E VELPL   +LY+QIGIDPP+GVLLYGPPGTGKT+L KAVANHT A FIRV GSEFVQKYLGEGPRMVRDVFRLA+E AP+I+FIDEVD+IAT RFDA T ADREVQR+L+ELLNQMDGFD   NVKVIMA NR DT+D
Sbjct:   59 GQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHTKATFIRVNGSEFVQKYLGEGPRMVRDVFRLAREKAPSIVFIDEVDSIATKRFDASTSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTID 287
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.978e-74
Identity = 128/229 (55.90%), Postives = 182/229 (79.48%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +VKVIMA NR++TLD
Sbjct:  110 GTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.978e-74
Identity = 128/229 (55.90%), Postives = 182/229 (79.48%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +VKVIMA NR++TLD
Sbjct:  110 GTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.978e-74
Identity = 128/229 (55.90%), Postives = 182/229 (79.48%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +VKVIMA NR++TLD
Sbjct:  110 GTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 5.195e-74
Identity = 127/229 (55.46%), Postives = 181/229 (79.04%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G   E++D N+ IV ++ GS +YV ILS ++++ L+P  SV L+   +A+V VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDE+DA+ T R+D+ +G +RE+QR ++ELLNQ+DGFD   +VKVIMA NR++TLD
Sbjct:  109 GNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 337
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 8.861e-74
Identity = 128/229 (55.90%), Postives = 180/229 (78.60%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G   E++D ++ IV S T  +YYV ILS +++ELL+P  SV LH  + ++V VL  +AD  +S++   + P  +Y+DIGG + Q QEI+E+VELPLTH ELY+++GI PP+GV+LYG PGTGKT+LAKAVAN T+A F+R+VGSE +QKYLG+GPR+ R +F++A ENAP+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +VKVIMA N+++TLD
Sbjct:  107 GTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.157e-73
Identity = 127/229 (55.46%), Postives = 181/229 (79.04%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G   E++D N+ IV ++ GS +YV ILS ++++LL+P  SV L+   +A++ VL  + D  ++++   + P  TY DIGG D Q QEI+E+VELPLTH E Y+++GI PP+GV+LYGPPGTGKT+LAKAVAN T+A F+RVVGSE +QKYLG+GP++VR++FR+A+E+ P+I+FIDE+DAI T R+D+ +G +RE+QR ++ELLNQ+DGFD   +VKVIMA NR++TLD
Sbjct:  110 GTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD 338
The following BLAST results are available for this feature:
BLAST of FC931954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PRS6B_SCHPO4.357e-10582.5326S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_DICDI5.691e-10584.2826S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_YEAST1.550e-10280.3526S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_ENCCU9.729e-9774.2426S protease regulatory subunit 6B homolog OS=Ence... [more]
PRS4_RAT3.978e-7455.9026S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE3.978e-7455.9026S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN3.978e-7455.9026S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_DROME5.195e-7455.4626S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_YEAST8.861e-7455.9026S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS4_CHICK1.157e-7355.4626S protease regulatory subunit 4 OS=Gallus gallus... [more]

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Properties
Property NameValue
Genbank descriptionC34203A01EF PostHarveN Citrus clementina cDNA clone C34203A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931954 ID=FC931954; Name=FC931954; organism=Citrus clementina; type=EST; length=689bp
CGGACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCA
CCACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAG
TTGTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCT
TGTTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCC
AGTCCGAGAAGCCCGACGTTACTTATAATGATATTGGAGGATGTGATATT
CAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGA
GCTATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATG
GTCCTCCTGGAACTGGTAAAACTATACTTGCGAAGGCTGTTGCCAATCAT
ACAACTGCAGCATTCATTAGAGTTGTTGGCTCTGAGTTTGTTCAGAAGTA
CCTGGGTGAGGGTCCACGAATGGTTCGGGATGTTTTTCGTCTTGCTAAAG
AGAATGCCCCTGCTATTATTTTTATTGATGAGGTAGATGCTATAGCTACA
GCTAGGTTTGATGCTCAAACTGGAGCTGATAGAGAAGTTCAACGAATCCT
TATGGAACTCCTCAATCAGATGGACGGATTTGATCAGACTGTAAATGTTA
AGGTCATCATGGCAAACAATCGGGTTGACACATTGGACC
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