FC931954

Overview
NameFC931954
Unique NameFC931954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:330..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.603e-61
Identity = 109/189 (57.67%), Postives = 144/189 (76.19%), Query Frame = 2
Query:  122 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            V + R+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E + ++GIDPP+GVL YGPPGTGKT+LA+AVAN T A FIRV+GSE VQKY+GEG RMVR++F++A+     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MA NR DTLD
Sbjct:  132 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 320          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.603e-61
Identity = 109/189 (57.67%), Postives = 144/189 (76.19%), Query Frame = 2
Query:  122 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            V + R+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E + ++GIDPP+GVL YGPPGTGKT+LA+AVAN T A FIRV+GSE VQKY+GEG RMVR++F++A+     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MA NR DTLD
Sbjct:  133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.603e-61
Identity = 109/189 (57.67%), Postives = 144/189 (76.19%), Query Frame = 2
Query:  122 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            V + R+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E + ++GIDPP+GVL YGPPGTGKT+LA+AVAN T A FIRV+GSE VQKY+GEG RMVR++F++A+     I+F DEVDAI  ARFD   G D EVQR ++E++NQ+DGFD   N+KV+MA NR DTLD
Sbjct:  133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLD 321          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.503e-60
Identity = 115/230 (50.00%), Postives = 165/230 (71.74%), Query Frame = 2
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGA-DREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G+ ++ + +N  +V       Y V I   I+ + +KP+  VAL   S  L+ +LP + D  +SL+   + PD TY  +GG + Q +EI+E +ELP+ H EL++ +GI  P+G+LLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQKY+GEG RMVR++F +A+E+AP+IIF+DE+D+I ++R D+  G+ D EVQR ++ELLNQ+DGF+ T N+KVIMA NR+D LD
Sbjct:   70 GEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 299          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.269e-60
Identity = 115/229 (50.22%), Postives = 160/229 (69.87%), Query Frame = 2
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G  +E + +   +V +     Y V++   +N + LK    VAL   S  +  +LP + D  +SL+   + PD TY  IGG D Q +EIRE +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQKY+GEG R+VR++F +A+E+AP+IIF+DE+D+I + R D+  G+D EVQR ++ELLNQ+DGF+   N+KVIMA NR+D LD
Sbjct:  121 GVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILD 349          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.576e-60
Identity = 111/231 (48.05%), Postives = 158/231 (68.40%), Query Frame = 2
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSIS--LLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G  +E++D+++G+V ++T  + Y+ I   I    L+P   VALH+ +N + + LPP+ D  +   +L    KPD TY DIGG + Q +E+ EA+ L LTH E ++++ I PP+GVL+YGPPGTGKT++A+A A+ T A F+++ G + VQ Y+G+G R+VRD F LAKE  P IIFIDE+DAI   R D+    DREVQR ++ELLNQ+DGF  +  VK+I A NRVD LD
Sbjct:   71 GNVVEVLDEHSGVVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLVRDAFALAKERKPTIIFIDEIDAIGAKRSDSDQTGDREVQRTMLELLNQLDGFSSSEEVKIIAATNRVDILD 301          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.622e-59
Identity = 113/229 (49.34%), Postives = 160/229 (69.87%), Query Frame = 2
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+KVIMA NR+D LD
Sbjct:   74 GEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 302          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.622e-59
Identity = 113/229 (49.34%), Postives = 160/229 (69.87%), Query Frame = 2
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+KVIMA NR+D LD
Sbjct:   74 GEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 302          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.622e-59
Identity = 113/229 (49.34%), Postives = 160/229 (69.87%), Query Frame = 2
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+KVIMA NR+D LD
Sbjct:   74 GEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 302          
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.622e-59
Identity = 113/229 (49.34%), Postives = 160/229 (69.87%), Query Frame = 2
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            G+ +  +D+   +V       + V +   I+   + P+  VAL   S  L  +LP + D  +SL+   + PD TY  IGG D Q +EI+E +ELP+ H EL++ +GI  P+GVLLYGPPGTGKT+LA+AVA+HT   FIRV GSE VQK++GEG RMVR++F +A+E+AP+IIF+DE+D+I ++R +  +G D EVQR ++ELLNQ+DGF+ T N+KVIMA NR+D LD
Sbjct:   74 GEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILD 302          
The following BLAST results are available for this feature:
BLAST of FC931954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PRS7_PRUPE8.603e-6157.6726S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_ORYSJ8.603e-6157.6726S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7A_ARATH8.603e-6157.6726S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS8_SCHPO2.503e-6050.0026S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8_ENCCU3.269e-6050.2226S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS6A_ENCCU5.576e-6048.0526S protease regulatory subunit 6A OS=Encephalitoz... [more]
PRS8_RAT1.622e-5949.3426S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG1.622e-5949.3426S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE1.622e-5949.3426S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN1.622e-5949.3426S protease regulatory subunit 8 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34203A01EF PostHarveN Citrus clementina cDNA clone C34203A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931954 ID=FC931954; Name=FC931954; organism=Citrus clementina; type=EST; length=689bp
CGGACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCA
CCACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAG
TTGTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCT
TGTTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCC
AGTCCGAGAAGCCCGACGTTACTTATAATGATATTGGAGGATGTGATATT
CAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGA
GCTATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATG
GTCCTCCTGGAACTGGTAAAACTATACTTGCGAAGGCTGTTGCCAATCAT
ACAACTGCAGCATTCATTAGAGTTGTTGGCTCTGAGTTTGTTCAGAAGTA
CCTGGGTGAGGGTCCACGAATGGTTCGGGATGTTTTTCGTCTTGCTAAAG
AGAATGCCCCTGCTATTATTTTTATTGATGAGGTAGATGCTATAGCTACA
GCTAGGTTTGATGCTCAAACTGGAGCTGATAGAGAAGTTCAACGAATCCT
TATGGAACTCCTCAATCAGATGGACGGATTTGATCAGACTGTAAATGTTA
AGGTCATCATGGCAAACAATCGGGTTGACACATTGGACC
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