FC931955

Overview
NameFC931955
Unique NameFC931955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931955 vs. ExPASy Swiss-Prot
Match: ADH_SCHPO (Alcohol dehydrogenase OS=Schizosaccharomyces pombe GN=adh1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 58/231 (25.11%), Postives = 92/231 (39.83%), Query Frame = 1
Query:   61 MSIPTTMKAVVVEQTGGPEVLQYKTSYPVPTPQAGQLLVRNNISGVNYIDTYFRTGLYPAPK--PEILGREXXXXXXXXXPGTSGFQVGDRVA--WLST---------------------------GGYAEYTAVPVALTAKIPEGISDEDIMASFLSGLTVLSFVKETYPVQKGDWVLLHXXXXXXXFLMTQILKILGAKVIGTAGGPEKCALVKSLGADVVIDYRSVED 660
            M+IP    A V    GGPE ++++   PV  P   ++LV    +GV + D +   G +P P   P I G E          G +  ++GDRV   W+++                           G +  Y          IPE +  E       +G+T    +KE+  V  G+W+ +         L  Q  K +  +V+    G +K  LVKS GA+V +D++   D
Sbjct:    1 MTIPDKQLAAVFHTHGGPENVKFE-EVPVAEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQLSGYTVDGTFQHYCIANATHATIIPESVPLEVAAPIMCAGITCYRALKES-KVGPGEWICIPGAGGGLGHLAVQYAKAMAMRVVAIDTGDDKAELVKSFGAEVFLDFKKEAD 229          
BLAST of FC931955 vs. ExPASy Swiss-Prot
Match: ADHA_RHIME (Alcohol dehydrogenase OS=Rhizobium meliloti GN=adhA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 61/223 (27.35%), Postives = 92/223 (41.26%), Query Frame = 1
Query:   76 TMKAVVVEQTGGPEVLQYKTSYPVPTPQAGQLLVRNNISGVNYIDTYFRTGLYPA-PKPEIL-GREXXXXXXXXXPGTSGFQVGDRVA--WLST---------------------------GGYAEYTAVPVALTAKIPEGISDEDIMASFLSGLTVLSFVKETYPVQKGDWVLLHXXXXXXXFLMTQILKILGAKVIGTAGGPEKCALVKSLGADVVIDYRS 651
            TM A VV + G P V++     PVP P  GQ+L++   +GV + D +   G +P  P P  + G E            +  + GDRV   WL T                           G +A+Y         ++P  +          +G+TV   +KET  V+ G+WVL+         +  Q  K +G  V      P+K AL + LGAD+V+D R+
Sbjct:    2 TMTAAVVREFGKPLVIE---EVPVPQPGPGQVLIKYEATGVCHTDLHAAKGDWPVRPNPPFIPGHEGVGYVAKLGAEVTRLKEGDRVGVPWLHTACGCCTPCRTGWETLCGSQQNTGYSVDGTFAQYGLADPDFVGRLPARLEFGPAAPVLCAGVTVYKGLKET-EVRPGEWVLVSGIGGLGH-MAVQYAKAMGMHVAAADIFPDKLALAEKLGADLVVDARA 219          
The following BLAST results are available for this feature:
BLAST of FC931955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
ADH_SCHPO7.003e-1225.11Alcohol dehydrogenase OS=Schizosaccharomyces pombe... [more]
ADHA_RHIME2.661e-1127.35Alcohol dehydrogenase OS=Rhizobium meliloti GN=adh... [more]

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Properties
Property NameValue
Genbank descriptionC34203A02EF PostHarveN Citrus clementina cDNA clone C34203A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931955 ID=FC931955; Name=FC931955; organism=Citrus clementina; type=EST; length=671bp
GATAGGACTTCGCAATCACATTGTCCCTCCATCATGAACCAATTCATTCC
AATCCGCAACATGTCTATCCCAACAACCATGAAGGCTGTAGTGGTCGAGC
AGACCGGCGGTCCTGAAGTGCTGCAATACAAGACCTCATACCCAGTTCCT
ACACCACAAGCAGGACAGCTGCTAGTGCGCAACAACATTTCCGGCGTTAA
CTATATCGACACCTACTTCCGGACGGGCCTATACCCCGCGCCCAAGCCCG
AGATCTTAGGCCGCGAGGGCGCTGGTGTTGTCGCTGCTGTCGGTCCCGGG
ACTTCTGGATTTCAGGTCGGTGATCGGGTTGCATGGTTGTCTACTGGTGG
GTATGCCGAGTACACTGCAGTACCAGTGGCCCTGACTGCTAAGATCCCCG
AGGGAATCAGTGATGAGGATATCATGGCGTCGTTCCTGAGCGGTTTGACA
GTGCTTTCTTTCGTAAAGGAGACTTACCCTGTGCAGAAGGGCGATTGGGT
TCTTCTTCATGCTGCGGCTGGTGGTGCTGGCTTCCTTATGACGCAGATTT
TGAAGATTTTGGGTGCCAAGGTCATTGGTACTGCTGGCGGCCCAGAGAAG
TGTGCGCTTGTGAAGAGCCTCGGTGCCGATGTGGTGATTGATTATCGCAG
TGTGGAAGATAAGAACTGGGT
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