FC931971

Overview
NameFC931971
Unique NameFC931971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_BURCH (Chaperone protein htpG OS=Burkholderia cenocepacia (strain HI2424) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF  L D  +     N  L I+I  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+  SGD
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPN--LRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKL--SGD 111          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_BURCA (Chaperone protein htpG OS=Burkholderia cenocepacia (strain AU 1054) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF  L D  +     N  L I+I  DK  + ++I D GIGM++++ I NLGTIA+SGT  F  K+  SGD
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYENDPN--LRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKL--SGD 111          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_ALCBS (Chaperone protein htpG OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 57/108 (52.78%), Postives = 82/108 (75.93%), Query Frame = 2
Query:  356 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            FQAEVSRL+ ++I+SLYSN++IFLRELISNASDA DK+RF +L +  +L +G     +I +++DK+   L+I D GIGM++ +++ NLGTIA+SGT  F+  +  SGD
Sbjct:   10 FQAEVSRLLHLMIHSLYSNREIFLRELISNASDACDKLRFEALDNPALLEQGGEP--QITLRVDKDAGTLTIADNGIGMSENEVVDNLGTIARSGTEKFLANL--SGD 113          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_XYLFA (Chaperone protein htpG OS=Xylella fastidiosa GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 59/126 (46.83%), Postives = 88/126 (69.84%), Query Frame = 2
Query:  326 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLXGQ 697
            +L  + +   FQ EV +L+ ++I+SLYSNK+IFLRELISNA+DA DK+RF +L+   +L E  N  L I+++ DK+   ++I D GIGM++++ I +LGTIAKSGT+ F++ +      D NL GQ
Sbjct:    2 TLEADKQTHGFQTEVKQLLQLMIHSLYSNKEIFLRELISNAADAADKLRFEALSAPALLEEDPN--LRIRVEFDKQAHTITIDDNGIGMSRDEAIAHLGTIAKSGTADFLKTLSGDQRKDANLIGQ 125          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 56/105 (53.33%), Postives = 85/105 (80.95%), Query Frame = 2
Query:  353 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ 667
            +FQ EV +L+D++I+SLYSN+DIFLRELISN+SDA+DKIRF + +++E+L EG N+  +I++  DK+   L+I D GIGMT  ++ +N+GTIA+SGT AF++ ++
Sbjct:    7 QFQTEVKQLLDLVIHSLYSNRDIFLRELISNSSDAIDKIRFEAHSNEELL-EG-NSDWKIKLIPDKDAGTLTILDNGIGMTMAEVEENIGTIARSGTKAFMQALK 109          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_NATTJ (Chaperone protein htpG OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  353 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 652
            EFQAE  RL+DI+INS+YSNK+IFLRELISNASDA+DK+ + SLTD  +  + +     I+I +DKE + L I D GIGMT+++L  N+G IA+SG+  F
Sbjct:    5 EFQAETKRLLDIVINSIYSNKEIFLRELISNASDAIDKLYYKSLTDNSL--DFNKDDYYIKITVDKENRQLKISDTGIGMTRQELEDNIGVIARSGSLDF 102          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_CUPTR (Chaperone protein htpG OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 57/112 (50.89%), Postives = 82/112 (73.21%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++ +  +L   ++  L I+I+ D + + L I D GIGM++++ I+NLGTIA+SGT  F +  Q SGD
Sbjct:    6 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDATDKLRFEAIANPSLL--ENDADLAIRIEADAKARTLKITDNGIGMSRDEAIRNLGTIARSGTKEFFQ--QLSGD 113          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_BORA1 (Chaperone protein htpG OS=Bordetella avium (strain 197N) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 59/121 (48.76%), Postives = 85/121 (70.25%), Query Frame = 2
Query:  341 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLXGQ 697
            +E   FQAEV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF ++   E+L  GD ++L I++  DK  + ++I D GIG+++E+ I NLGTIA+SGT  F  ++      D  L GQ
Sbjct:    7 SETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPELLA-GD-SELAIRVSYDKAARTITIADNGIGLSREEAIANLGTIARSGTREFFSQLTGDKQKDAQLIGQ 125          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_BACSU (Chaperone protein htpG OS=Bacillus subtilis GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 57/117 (48.72%), Postives = 86/117 (73.50%), Query Frame = 2
Query:  347 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            K EF+AE  RL+D++INS+Y+ K+IFLRELISN+SDA+DKI + +LTD  +  + D+    I++  DK+ + L+I D GIGMTK++L ++LGTIAKSG+ AF ++ +     ++ GQ
Sbjct:    3 KKEFKAESKRLLDMMINSIYTQKEIFLRELISNSSDAIDKIYYKALTDDALTFDKDS--YYIKVAADKDARTLTISDTGIGMTKDELEQHLGTIAKSGSLAFKKENELKDGHDIIGQ 117          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_WOLTR (Chaperone protein htpG OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 55/112 (49.11%), Postives = 82/112 (73.21%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            E  +F AEV ++++I+I+SLY+NKDIFLREL+SNASDA DK+R+ S  +  +L    + +L+I I  +K++  L + D GIGM+++DLI NLGTIA SGT  F++ ++ S D
Sbjct:   13 ENLKFDAEVGKVLNIVIHSLYTNKDIFLRELVSNASDACDKLRYESQLNPNLL--DSSGELKITISSNKDENELYVTDNGIGMSRQDLIGNLGTIASSGTQKFLDAIKNSKD 122          
The following BLAST results are available for this feature:
BLAST of FC931971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
HTPG_BURCH2.510e-2352.68Chaperone protein htpG OS=Burkholderia cenocepacia... [more]
HTPG_BURCA2.510e-2352.68Chaperone protein htpG OS=Burkholderia cenocepacia... [more]
HTPG_ALCBS2.510e-2352.78Chaperone protein htpG OS=Alcanivorax borkumensis ... [more]
HTPG_XYLFA3.279e-2346.83Chaperone protein htpG OS=Xylella fastidiosa GN=ht... [more]
HTPG_PELPD3.279e-2353.33Chaperone protein htpG OS=Pelobacter propionicus (... [more]
HTPG_NATTJ3.279e-2356.00Chaperone protein htpG OS=Natranaerobius thermophi... [more]
HTPG_CUPTR3.279e-2350.89Chaperone protein htpG OS=Cupriavidus taiwanensis ... [more]
HTPG_BORA13.279e-2348.76Chaperone protein htpG OS=Bordetella avium (strain... [more]
HTPG_BACSU3.279e-2348.72Chaperone protein htpG OS=Bacillus subtilis GN=htp... [more]
HTPG_WOLTR4.282e-2349.11Chaperone protein htpG OS=Wolbachia sp. subsp. Bru... [more]

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Properties
Property NameValue
Genbank descriptionC34203B10EF PostHarveN Citrus clementina cDNA clone C34203B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931971 ID=FC931971; Name=FC931971; organism=Citrus clementina; type=EST; length=699bp
GACCTGCGCTATATAATCATCCAACGGCGAAGTGAGCAAAAACAATAGGC
AATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTATACTAATT
TCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTGCTTCTCCT
TTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACAGGCAAAAG
CAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCGAGGAGAAA
CTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTGGCAAAGAG
GGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGCGGAGAAAT
TTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCATCAATTCT
CTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCCAATGCTTC
TGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAAAGAGGTCT
TGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGCTAGACAAA
GAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATGACGAAGGA
GGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAACATCAGCAT
TTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTNATGGGCAATT
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