FC931971

Overview
NameFC931971
Unique NameFC931971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_RHIME (Chaperone protein htpG OS=Rhizobium meliloti GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 49/115 (42.61%), Postives = 87/115 (75.65%), Query Frame = 2
Query:  329 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS 673
            +  + EK  F+A+V++L+ ++++S+YS+K++FLRELISNA+DA +K+R+ ++   E+LG    ++  I + LD+E   L I D GIGM +++L+++LGTIA+SGT AF+E+++ +
Sbjct:    4 VETSVEKHVFEADVAKLLHLMVHSVYSDKNVFLRELISNAADACEKLRYEAIVAPELLGSDPASR--ITLTLDEENARLVIEDNGIGMGRDELVESLGTIARSGTRAFMERIEAA 116          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_COLP3 (Chaperone protein htpG OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 2
Query:  335 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLXGQ 697
            N  +   F ++ ++++ ++I+SLYSNK+IFLREL+SNA+DA DK+RF +L+D   L E D   L +++  DKE   L+I D GIGM  +++I++LGTIAKSGT+ F  ++    + D  L GQ
Sbjct:    5 NQVQNHAFASDNAKILQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSD-NTLYENDG-DLRVRVSCDKENNTLTISDNGIGMNVDEVIEHLGTIAKSGTAEFFSQLSGDQASDSQLIGQ 125          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_BORAP (Chaperone protein htpG OS=Borrelia afzelii (strain PKo) GN=htpG PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.183e-22
Identity = 58/119 (48.74%), Postives = 82/119 (68.91%), Query Frame = 2
Query:  347 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE--KMQTSGDLNLXGQ 697
            K +F  EV+ L+ +II+SLYS+K+IFLRELISNASDA+DK++FLSLT+++      N  LE +I++  + K + I+D GIGM +++L  +LG IAKSGT  F+   K       NL GQ
Sbjct:    2 KKQFDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKF----KNIALEPKIEITFDDKSILIKDNGIGMNEQELTNHLGVIAKSGTKEFINNLKQDEKKSANLIGQ 116          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_NITHX (Chaperone protein htpG OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 47/107 (43.93%), Postives = 85/107 (79.44%), Query Frame = 2
Query:  341 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 661
            AE   F+A+V++L+ ++++S+YS+KD+FLRELISNA+DA +++R+ +++D  +L   D+ + +I I +D E++ L++ D GIGM++++++  LGTIA+SGT AF+E+
Sbjct:   11 AESRVFEADVAKLLQMMVHSVYSDKDVFLRELISNAADACERLRYDAISDPALL--ADDARPQIAITIDAERRQLTVDDNGIGMSRDEMVDALGTIARSGTKAFIEQ 115          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_GEOMG (Chaperone protein htpG OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 54/105 (51.43%), Postives = 81/105 (77.14%), Query Frame = 2
Query:  353 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ 667
            +F+ EV +L+D++I+SLYSNKDIFLRELISN+SDA+DK+ F +  +  V+ EG+  + +I++  DKE   ++IRD G+GMT E++ KN+GTIA SGT AF+  ++
Sbjct:    7 KFETEVQQLLDLVIHSLYSNKDIFLRELISNSSDAIDKVLFEAHQNAAVI-EGE-PEGKIKLIPDKEAGTITIRDNGVGMTMEEVEKNIGTIAHSGTKAFLANLK 109          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_BUCBP (Chaperone protein htpG OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 57/124 (45.97%), Postives = 85/124 (68.55%), Query Frame = 2
Query:  332 RNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDL--NLXGQ 697
            +N  + + F++E   L+ ++I+SLYSN++IF RELISNA+DA+DK++F +++  E L E D T L I+I  +K    L+I D GIGM  ED+I NLGTIAKSGT  F++ +  +  +  +L GQ
Sbjct:    5 KNQKKTYNFKSETKELLHLMIHSLYSNREIFFRELISNAADAIDKLKFNAISAPE-LYEND-TNLYIRIFSNKNNNSLTISDNGIGMKYEDIINNLGTIAKSGTKEFIKTLNKNNKIKNDLIGQ 126          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_BORGA (Chaperone protein htpG OS=Borrelia garinii GN=htpG PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 54/107 (50.47%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  347 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ 667
            K +F  EV+ L+ +II+SLYS+K+IFLRELISNASDA+DK++FLSLT+++      N  LE +I++  + K + I+D GIGM ++DL  +LG IAKSGT  F+  ++
Sbjct:    2 KKQFDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKF----KNIALEPKIEITFDDKSILIKDNGIGMNEQDLTNHLGVIAKSGTKEFINNLK 104          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_BORBU (Chaperone protein htpG OS=Borrelia burgdorferi GN=htpG PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.075e-22
Identity = 54/107 (50.47%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  347 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ 667
            K +F  EV+ L+ +II+SLYS+K+IFLRELISNASDA+DK++FLSLT+++      N  LE +I++  + K + I+D GIGM ++DL  +LG IAKSGT  F+  ++
Sbjct:    2 KKQFDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKF----KNIALEPKIEISFDDKSILIKDNGIGMDEQDLTNHLGVIAKSGTKEFINNLK 104          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_PSEA6 (Chaperone protein htpG OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 57/112 (50.89%), Postives = 82/112 (73.21%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            E   FQ EV +L+ ++I+SLYSNK+IFLREL+SNA+DA DK+RF +L++ + L EGD   L +++ +DK+   ++I D GIGM +  +I++LGTIAKSGTS F   +  SGD
Sbjct:    8 ETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSN-DSLYEGDG-DLCVKLSIDKDAGSITISDNGIGMDRASVIEHLGTIAKSGTSEFFSNL--SGD 115          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_METNO (Chaperone protein htpG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 52/107 (48.60%), Postives = 79/107 (73.83%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM 664
            E+  F AEV RL+D+++++LYS ++IFLREL++NA+DA+D+ RF +LTD  +    +    +++I+ DK  + L+I D GIGM KEDL +NLGTIA+SGT AF + +
Sbjct:    6 ERHAFGAEVGRLLDLVVHALYSEREIFLRELVANAADAVDRRRFGALTDPALALPAE---AKVRIRPDKAARTLTISDPGIGMGKEDLAQNLGTIARSGTRAFSQSL 109          
The following BLAST results are available for this feature:
BLAST of FC931971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
HTPG_RHIME6.183e-2242.61Chaperone protein htpG OS=Rhizobium meliloti GN=ht... [more]
HTPG_COLP36.183e-2244.72Chaperone protein htpG OS=Colwellia psychrerythrae... [more]
HTPG_BORAP6.183e-2248.74Chaperone protein htpG OS=Borrelia afzelii (strain... [more]
HTPG_NITHX8.075e-2243.93Chaperone protein htpG OS=Nitrobacter hamburgensis... [more]
HTPG_GEOMG8.075e-2251.43Chaperone protein htpG OS=Geobacter metallireducen... [more]
HTPG_BUCBP8.075e-2245.97Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_BORGA8.075e-2250.47Chaperone protein htpG OS=Borrelia garinii GN=htpG... [more]
HTPG_BORBU8.075e-2250.47Chaperone protein htpG OS=Borrelia burgdorferi GN=... [more]
HTPG_PSEA61.055e-2150.89Chaperone protein htpG OS=Pseudoalteromonas atlant... [more]
HTPG_METNO1.377e-2148.60Chaperone protein htpG OS=Methylobacterium nodulan... [more]

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Properties
Property NameValue
Genbank descriptionC34203B10EF PostHarveN Citrus clementina cDNA clone C34203B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931971 ID=FC931971; Name=FC931971; organism=Citrus clementina; type=EST; length=699bp
GACCTGCGCTATATAATCATCCAACGGCGAAGTGAGCAAAAACAATAGGC
AATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTATACTAATT
TCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTGCTTCTCCT
TTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACAGGCAAAAG
CAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCGAGGAGAAA
CTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTGGCAAAGAG
GGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGCGGAGAAAT
TTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCATCAATTCT
CTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCCAATGCTTC
TGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAAAGAGGTCT
TGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGCTAGACAAA
GAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATGACGAAGGA
GGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAACATCAGCAT
TTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTNATGGGCAATT
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