FC931971

Overview
NameFC931971
Unique NameFC931971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_AZOC5 (Chaperone protein htpG OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=htpG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 47/110 (42.73%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS 673
            E   F+A+V++L+ ++++S+YS+KD+FLRELISNA+DA +K+R+ ++T   +LGE  + +  I + +D E   L++ D GIGM+++++++ LGTIA+SGT AF+E+++ +
Sbjct:   10 ESRTFEADVAKLLHLMVHSVYSDKDVFLRELISNAADACEKLRYEAITTPALLGE--DARPRITLAIDAEGGRLTVEDNGIGMSRDEMVEALGTIARSGTKAFMERIEAA 117          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_DESVH (Chaperone protein htpG OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=htpG PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 51/100 (51.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  356 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 655
            F+ EV +++ II +SLY+N++IFLREL+SNASDALDK+RF+      V+    +    I I +DKE +IL+I D G+GMT+++L+ NLGTIA+SG+  FV
Sbjct:   10 FRTEVRKMLHIITHSLYTNREIFLRELVSNASDALDKLRFIRSRGDAVV--APDLAPGIDISVDKEARILTIADTGVGMTRQELMDNLGTIARSGSEQFV 107          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_RHIEC (Chaperone protein htpG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 46/113 (40.71%), Postives = 82/113 (72.57%), Query Frame = 2
Query:  326 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM 664
            ++   AE   F+A+V+RL+ ++++S+YS+K +FLRELISN +DA +K+R+ ++    +L    + +  I ++LD+E + L + D GIGM ++++I+ LGTIA+SGT AF+E++
Sbjct:    4 TVEQTAESHVFEADVARLLHMMVHSVYSDKGVFLRELISNGADACEKLRYEAIETPSLLAA--DAESRIMLRLDEESRQLVVEDNGIGMRRDEMIEALGTIARSGTRAFMERI 114          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HSP82_ENCCU (Heat shock protein 90 OS=Encephalitozoon cuniculi GN=HSP90 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 55/126 (43.65%), Postives = 86/126 (68.25%), Query Frame = 2
Query:  338 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIR--FLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD----LNLXGQ 697
            ++E   F+ +V+++MD +I S+YS+K++FLREL+SN+SDA DK++  +  L +K  + +   T L I+I  +K+ + L+I+D GIGMTK DL+  +GTIA SGT  F E+M+  G+     NL GQ
Sbjct:   17 HSETHGFEVDVNQMMDTMIKSVYSSKELFLRELVSNSSDACDKLKALYFQLREKGCVLD-PVTSLGIEIIPNKDNRTLTIKDNGIGMTKPDLMNFIGTIASSGTKKFREEMKEKGNSADASNLIGQ 141          
The following BLAST results are available for this feature:
BLAST of FC931971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
HTPG_AZOC51.377e-2142.73Chaperone protein htpG OS=Azorhizobium caulinodans... [more]
HTPG_DESVH6.836e-2151.00Chaperone protein htpG OS=Desulfovibrio vulgaris (... [more]
HTPG_RHIEC4.431e-2040.71Chaperone protein htpG OS=Rhizobium etli (strain C... [more]
HSP82_ENCCU5.787e-2043.65Heat shock protein 90 OS=Encephalitozoon cuniculi ... [more]

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Properties
Property NameValue
Genbank descriptionC34203B10EF PostHarveN Citrus clementina cDNA clone C34203B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931971 ID=FC931971; Name=FC931971; organism=Citrus clementina; type=EST; length=699bp
GACCTGCGCTATATAATCATCCAACGGCGAAGTGAGCAAAAACAATAGGC
AATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTATACTAATT
TCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTGCTTCTCCT
TTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACAGGCAAAAG
CAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCGAGGAGAAA
CTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTGGCAAAGAG
GGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGCGGAGAAAT
TTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCATCAATTCT
CTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCCAATGCTTC
TGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAAAGAGGTCT
TGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGCTAGACAAA
GAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATGACGAAGGA
GGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAACATCAGCAT
TTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTNATGGGCAATT
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