FC931971 | Citrus Genome Database

Overview


Name	FC931971
Unique Name	FC931971
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	699

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HS90A_PIG (Heat shock protein HSP 90-alpha OS=Sus scrofa GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 2

Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G   +L I +  +K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:   18 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSG--KELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQ 133

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HS90A_PANTR (Heat shock protein HSP 90-alpha OS=Pan troglodytes GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 2

Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G   +L I +  +K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:   18 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSG--KELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQ 133

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HS90A_MACFA (Heat shock protein HSP 90-alpha OS=Macaca fascicularis GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 2

Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G   +L I +  +K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:   18 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSG--KELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQ 133

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HS90A_HUMAN (Heat shock protein HSP 90-alpha OS=Homo sapiens GN=HSP90AA1 PE=1 SV=5)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 2

Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G   +L I +  +K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:   18 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSG--KELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQ 133

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HS90A_HORSE (Heat shock protein HSP 90-alpha (Fragment) OS=Equus caballus GN=HSP90AA1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 2

Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G   +L I +  +K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:    7 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSG--KELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQ 122

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HS90A_BOVIN (Heat shock protein HSP 90-alpha OS=Bos taurus GN=HSP90AA1 PE=2 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 70/118 (59.32%), Postives = 89/118 (75.42%), Query Frame = 2

Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G   +L I +  +K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:   18 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSG--KELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQ 133

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: ENPL_RABIT (Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 67/101 (66.34%), Postives = 84/101 (83.17%), Query Frame = 2

Query:  362 AEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM 664
            AEV+R+M +IINSLY NK+IFLRELISNASDALDKIR +SLTD++ L    N +L ++IK DKEK +L + D G+GMT+E+L+KNLGTIAKSGTS F+ KM
Sbjct:    1 AEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEQAL--SGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 99

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HSP83_DROVI (Heat shock protein 83 (Fragment) OS=Drosophila virilis GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 2

Query:  341 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            AE F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ SLTD   L  G   +L I++  +K    L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:    5 AETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSG--KELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADISMIGQ 121

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HSP83_DROSI (Heat shock protein 83 (Fragment) OS=Drosophila simulans GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 2

Query:  341 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            AE F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ SLTD   L  G   +L I++  +K    L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:    5 AETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSG--KELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADISMIGQ 121

[Close]

BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 2

Query:  341 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            AE F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ SLTD   L  G   +L I++  +K    L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:    5 AETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSG--KELYIKLIPNKTAGTLTIIDTGIGMTKSDLVNNLGTIAKSGTKAFMEALQAGADISMIGQ 121

The following BLAST results are available for this feature:

BLAST of FC931971 vs. ExPASy Swiss-Prot

BLAST of FC931971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374


Match Name	E-value	Identity	Description
HS90A_PIG	7.287e-31	59.32	Heat shock protein HSP 90-alpha OS=Sus scrofa GN=H...	[more]
HS90A_PANTR	7.287e-31	59.32	Heat shock protein HSP 90-alpha OS=Pan troglodytes...	[more]
HS90A_MACFA	7.287e-31	59.32	Heat shock protein HSP 90-alpha OS=Macaca fascicul...	[more]
HS90A_HUMAN	7.287e-31	59.32	Heat shock protein HSP 90-alpha OS=Homo sapiens GN...	[more]
HS90A_HORSE	7.287e-31	59.32	Heat shock protein HSP 90-alpha (Fragment) OS=Equu...	[more]
HS90A_BOVIN	7.287e-31	59.32	Heat shock protein HSP 90-alpha OS=Bos taurus GN=H...	[more]
ENPL_RABIT	7.287e-31	66.34	Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN...	[more]
HSP83_DROVI	9.517e-31	59.66	Heat shock protein 83 (Fragment) OS=Drosophila vir...	[more]
HSP83_DROSI	9.517e-31	59.66	Heat shock protein 83 (Fragment) OS=Drosophila sim...	[more]
HSP83_DROPS	9.517e-31	59.66	Heat shock protein 83 OS=Drosophila pseudoobscura ...	[more]

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Properties


Property Name	Value
Genbank description	C34203B10EF PostHarveN Citrus clementina cDNA clone C34203B10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931971 ID=FC931971; Name=FC931971; organism=Citrus clementina; type=EST; length=699bp
GACCTGCGCTATATAATCATCCAACGGCGAAGTGAGCAAAAACAATAGGC
AATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTATACTAATT
TCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTGCTTCTCCT
TTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACAGGCAAAAG
CAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCGAGGAGAAA
CTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTGGCAAAGAG
GGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGCGGAGAAAT
TTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCATCAATTCT
CTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCCAATGCTTC
TGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAAAGAGGTCT
TGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGCTAGACAAA
GAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATGACGAAGGA
GGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAACATCAGCAT
TTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTNATGGGCAATT