FC931971

Overview
NameFC931971
Unique NameFC931971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_RHORT (Chaperone protein htpG OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.384e-27
Identity = 66/123 (53.66%), Postives = 88/123 (71.54%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ-----TSGDLNLXGQ 697
            E   FQAEVS+L+DI+++SLYS++ IFLRELISNASDA DK+R+  LT   +L EGD     I++ +D E   L+I D GIGM + +LI+NLGTIA+SGT AF E ++      SGD++L GQ
Sbjct:    4 ETLSFQAEVSKLLDIVVHSLYSDRKIFLRELISNASDACDKLRYEGLTQPALL-EGDGA-FRIRLSIDAEAGTLTIADNGIGMNRHELIENLGTIARSGTQAFAEALKAKSQAASGDVSLIGQ 124          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_RICTY (Chaperone protein htpG OS=Rickettsia typhi GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 62/112 (55.36%), Postives = 89/112 (79.46%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E++    N K  I +K+DK+ + + IRD GIGM KEDLI+NLGTIA+SGT+ F++ +  SGD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELISGDSNFK--IIVKVDKDNEQIIIRDNGIGMNKEDLIENLGTIARSGTANFLKNL--SGD 111          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.337e-27
Identity = 62/121 (51.24%), Postives = 89/121 (73.55%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG---DLNLXGQ 697
            E   FQAE+++L+ ++INSLYS+K+IFLREL+SNASDALDK+RF ++T+ E+L   D   LE+++  D+ K  L+I D GIGM+ ++L+KNLGTIA SG+  F+E +   G   D+ L GQ
Sbjct:   10 ETHAFQAEINQLLSLVINSLYSHKEIFLRELVSNASDALDKLRFRAITEPELL--ADEPALELRLIPDEAKGTLTIEDTGIGMSHDELVKNLGTIAHSGSREFIEALAQKGQQKDMQLIGQ 128          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_YERE8 (Chaperone protein htpG OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 65/116 (56.03%), Postives = 89/116 (76.72%), Query Frame = 2
Query:  356 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLXGQ 697
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L+  E L EGD  +L +++  DKEK+ L++ D GIGM++E++I NLGTIAKSGT AF+E +    + D  L GQ
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSHPE-LFEGDG-ELRVRLSFDKEKRTLTLSDNGIGMSREEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQ 124          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRW (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Welgevonden) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 59/111 (53.15%), Postives = 87/111 (78.38%), Query Frame = 2
Query:  338 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT 670
            N+E+ +F AEV +++ ++I+SLY+NKDIFLRELISNASDA DK+R+ SL++++++  G  ++L+I I +DK+K  L I D GIGM +EDLI NLGTIA SGT  F++ + +
Sbjct:    6 NSERLKFDAEVGKVLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAG--SELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINS 114          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_EHRRG (Chaperone protein htpG OS=Ehrlichia ruminantium (strain Gardel) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 59/111 (53.15%), Postives = 87/111 (78.38%), Query Frame = 2
Query:  338 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT 670
            N+E+ +F AEV +++ ++I+SLY+NKDIFLRELISNASDA DK+R+ SL++++++  G  ++L+I I +DK+K  L I D GIGM +EDLI NLGTIA SGT  F++ + +
Sbjct:    6 NSERLKFDAEVGKVLKLVIHSLYTNKDIFLRELISNASDACDKLRYQSLSNQDLMDAG--SELKIVISVDKDKNRLYISDNGIGMNREDLINNLGTIAHSGTQKFLDAINS 114          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HSP83_DROPB (Heat shock protein 83 (Fragment) OS=Drosophila pseudoobscura bogotana GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.089e-26
Identity = 66/119 (55.46%), Postives = 81/119 (68.07%), Query Frame = 2
Query:  341 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLXGQ 697
            AE F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ S TD   L              +K    L+I D GI MTK DL+ NLGTIAKSGT AF+E +Q   D+++ GQ
Sbjct:    5 AETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYXSXTDPXKL--XXXXXXXXXXIPNKTAGTLTIIDTGIXMTKSDLVNNLGTIAKSGTKAFMEALQAGADISMIGQ 121          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_RICFE (Chaperone protein htpG OS=Rickettsia felis GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 62/112 (55.36%), Postives = 88/112 (78.57%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E+     N K  I +K+DK+K  + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +  SGD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELTSGDSNFK--ITVKVDKDKGQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSL--SGD 111          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_RICCN (Chaperone protein htpG OS=Rickettsia conorii GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 61/112 (54.46%), Postives = 89/112 (79.46%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            EK +F AEV ++++++I+SLYSNK+IF+RELISNASDA DK+R+LS ++ E++    N K  I +K+DK+ + + IRD GIGM K+DLI+NLGTIA+SGT+ F++ +  SGD
Sbjct:    4 EKKKFDAEVGKILNLMIHSLYSNKEIFMRELISNASDACDKLRYLSQSNSELVAGDSNFK--ITVKVDKDHRQIIIRDNGIGMNKDDLIENLGTIARSGTANFLKSL--SGD 111          
BLAST of FC931971 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.422e-26
Identity = 59/112 (52.68%), Postives = 86/112 (76.79%), Query Frame = 2
Query:  344 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD 679
            EK  FQ EV +L+ ++I+SLYSNK+IFLREL+SNASDA DK+RF +L+D  +   GD++ L +++ +DK+ + ++I D G+GMT++D++ NLGTIAKSGT+ F    Q SGD
Sbjct:    8 EKHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFKALSDNSLY--GDDSDLHVRVSVDKDSRTITISDNGVGMTRDDVMNNLGTIAKSGTAEFFG--QLSGD 115          
The following BLAST results are available for this feature:
BLAST of FC931971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
HTPG_RHORT6.384e-2753.66Chaperone protein htpG OS=Rhodospirillum rubrum (s... [more]
HTPG_RICTY8.337e-2755.36Chaperone protein htpG OS=Rickettsia typhi GN=htpG... [more]
HTPG_MYXXD8.337e-2751.24Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_YERE81.089e-2656.03Chaperone protein htpG OS=Yersinia enterocolitica ... [more]
HTPG_EHRRW1.089e-2653.15Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]
HTPG_EHRRG1.089e-2653.15Chaperone protein htpG OS=Ehrlichia ruminantium (s... [more]
HSP83_DROPB1.089e-2655.46Heat shock protein 83 (Fragment) OS=Drosophila pse... [more]
HTPG_RICFE1.422e-2655.36Chaperone protein htpG OS=Rickettsia felis GN=htpG... [more]
HTPG_RICCN1.422e-2654.46Chaperone protein htpG OS=Rickettsia conorii GN=ht... [more]
HTPG_IDILO1.422e-2652.68Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203B10EF PostHarveN Citrus clementina cDNA clone C34203B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931971 ID=FC931971; Name=FC931971; organism=Citrus clementina; type=EST; length=699bp
GACCTGCGCTATATAATCATCCAACGGCGAAGTGAGCAAAAACAATAGGC
AATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTATACTAATT
TCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTGCTTCTCCT
TTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACAGGCAAAAG
CAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCGAGGAGAAA
CTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTGGCAAAGAG
GGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGCGGAGAAAT
TTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCATCAATTCT
CTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCCAATGCTTC
TGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAAAGAGGTCT
TGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGCTAGACAAA
GAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATGACGAAGGA
GGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAACATCAGCAT
TTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTNATGGGCAATT
back to top