FC931975

Overview
NameFC931975
Unique NameFC931975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.248e-26
Identity = 75/203 (36.95%), Postives = 120/203 (59.11%), Query Frame = 2
Query:  113 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS--LLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALFKPNA 697
            +GV YG  A++LP P +V   ++ Q  I  V+++D N + L+AF +T+I + + V N D+ A ++  +   +W+ N++LP++P T   YI +G E  +T D  + AS  ++PAM+ + +AL    LS  ++VST  SLGILS S PPS G F   Y       +LEF  + KSPFM + YPY+  +      +L+Y LF+ ++
Sbjct:   26 VGVCYGRSADDLPTPSKVVQLIQ-QHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAE--STDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSY-AYFLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSS 224          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 77/207 (37.20%), Postives = 108/207 (52.17%), Query Frame = 2
Query:   80 CNAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQT----LNYALF 685
            CN     A  +IGV YG IANNLP  Q V N  K    I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+  T++      LL AM+ + +AL AA L   ++VST    G+L+ + PP    FR+     I   I+EF  +   P + N YPYFG    T    L+YALF
Sbjct:   25 CNIQITGAQSNIGVCYGEIANNLPSEQDVINLYKANG-IRKMRIYYPDTNIFKALNGSNIEIILEVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMKNVYNALAAAGLQDKIKVSTATYSGLLANTYPPKDSIFREELKSFI-NPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALF 229          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.540e-26
Identity = 73/207 (35.27%), Postives = 115/207 (55.56%), Query Frame = 2
Query:   86 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALFKP 691
            A  P++  SIGV YG I NNLP    V    +++  I+ ++++ A+ + L A  ++ I + + +GN  +  +A   + A SWV NN+ P++P    +YI  GNE+   + +    S+LPAMR L +AL AA L +++VST      ++ S PPS G F+  Y   + AR+L     T +P + N YPYF  +      +LNYA F+P
Sbjct:   20 AAVPTSVQSIGVCYGVIGNNLPSRSDVVQLYRSKG-INGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQ----SILPAMRNLNAALSAAGLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDV-ARLL---ASTGAPLLANVYPYFAYRDNPGSISLNYATFQP 217          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.236e-26
Identity = 74/207 (35.75%), Postives = 110/207 (53.14%), Query Frame = 2
Query:   80 CNAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQT----LNYALF 685
            CN     A  +IGV YG IANNLP  Q V N  K    I ++++++++    ++   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+  +++      LL AM  + +AL AA L   ++V+T    G+L+ + PP    FR+ +   I   I+EF  +   P + N YPYFG    T    L+YALF
Sbjct:   25 CNIQMTGAQSNIGVCYGKIANNLPSEQDVINLYKANG-IRKMRIYNSDTNIFKSLNGSNIEIILDVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAMENVYNALAAAGLQDKIKVTTATYSGLLANTYPPKDSIFREEFKSFI-NPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALF 229          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 73/201 (36.32%), Postives = 105/201 (52.24%), Query Frame = 2
Query:  113 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQTI-FRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALFKPNA 697
            IGV YG IANNLPP ++V    +++  I  ++++   P+ +RA   + I + +   N D+  LA  L AA SWV  N+ P+H   +  RYI +GNEI   + +    S+L AMR L  AL AA L  ++VST     +++ S PPS+  F + Y       I      T +P + N YPYF          LNYA F+P A
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKG-ITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEITGGAAQ----SILAAMRNLNKALAAARLGGIKVSTAVRFDVITNSFPPSSAVFAQPY----MVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQPGA 192          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 72/203 (35.47%), Postives = 113/203 (55.67%), Query Frame = 2
Query:   98 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ--TLNYALFKPNA 697
            + A  IGV +G + NN+P P +V    K Q +I R++++  NP+ L A   +NI   + V NGD+  LA   A A +WV +N+  ++    F+YI +GNE+         A+L+ AM+ +  AL AA LS+++VST   +G    + PPS GRF+  Y R     ++ F    +SP + N Y YFG   +  +L +AL +PN+
Sbjct:   22 TTAGQIGVCFGQMGNNIPNPSEVVAMFK-QYSIPRMRMYGPNPDALNALRGSNIEFILDVPNGDLKRLADSQAEANTWVRDNVQKYN-DVRFKYISVGNEVKPGEPGA--AALIQAMQNIDRALSAAGLSNIKVSTTTFMGPSRNTYPPSRGRFKDEY-RNFLQPVIGFLVNKRSPLLVNIYTYFGYMNRDVSLQFALLQPNS 219          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 71/199 (35.68%), Postives = 103/199 (51.76%), Query Frame = 2
Query:  104 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYF----GVQPQTLNYALF 685
            A SIGV YG IANNLP  Q V N  K    I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+   ++      LL AM  + +AL A+ L   ++V+T    G+L+ + PP    FR  ++  I   I++F  Q   P + N YPYF          L+YALF
Sbjct:   29 AQSIGVCYGKIANNLPSEQDVINLYKANG-IRKMRIYYPDKNIFKALKGSNIEIILDVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPINNGQYSQFLLHAMENVYNALAASGLQDKIKVTTATYSGLLANTYPPKASIFRGEFNSFINP-IIQFLAQNNLPLLANVYPYFVHISNTADVPLSYALF 225          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 71/199 (35.68%), Postives = 105/199 (52.76%), Query Frame = 2
Query:  104 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYF----GVQPQTLNYALF 685
            A SIGV YG  ANNLP  Q V N L     I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GN++  T++      LL AM+ + +AL AA L   ++VST    G+L+ + PP    FR+ +   I   I++F  +   P + N YPYF         +L+YALF
Sbjct:    9 AQSIGVCYGKAANNLPSDQDVIN-LYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVYNALAAAGLQDMIKVSTVTYSGVLANTYPPERSIFREEFKSFI-NPIIQFLARNNLPLLANVYPYFVHVSNTADVSLSYALF 205          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 74/201 (36.82%), Postives = 101/201 (50.25%), Query Frame = 2
Query:   98 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLL-PAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQT--LNYALFK 688
            + A  IGV YG IANNLP  Q V   L     I +++++        A   +NI + + V N D+ ALA     Q WV +NI  H P   F+YI +GNE+    D    A  + PAM  + +AL +A L + ++VST   LG+L+ + PP    FR  Y   I   I+ F  +   P + N YPYFG       L YALFK
Sbjct:   21 TGAQPIGVCYGKIANNLPSDQDVIK-LYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALANPSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDEYKSFI-NPIIGFLSRHNLPLLANIYPYFGHADDNVPLPYALFK 219          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 2
Query:  104 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFG----VQPQTLNYALFKPNAA 700
            A SIGV YG  ANNLP  Q V N L     I ++++++ +     A   +NI + + V   D+ +L     A  WV +NI+ H P   F+YI +GNE+   ++      + PAM+ + +AL AA L   ++VST    GIL+ + PP    FR  ++  I   I++F  Q   P + N YPYFG         L+YALF    A
Sbjct:   29 AQSIGVCYGKHANNLPSDQDVIN-LYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDLQSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNEVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFI-NPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALFTQQEA 230          
The following BLAST results are available for this feature:
BLAST of FC931975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E1313_ARATH3.248e-2636.95Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E13D_TOBAC4.242e-2637.20Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13B_HORVU5.540e-2635.27Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13C_TOBAC7.236e-2635.75Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13D_HORVU1.365e-2436.32Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13B_BRACM1.782e-2435.47Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13L_TOBAC6.773e-2435.68Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13K_TOBAC6.773e-2435.68Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13A_SOLLC1.509e-2336.82Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13G_TOBAC9.780e-2334.80Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]

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Properties
Property NameValue
Genbank descriptionC34203C02EF PostHarveN Citrus clementina cDNA clone C34203C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931975 ID=FC931975; Name=FC931975; organism=Citrus clementina; type=EST; length=708bp
GCTCCTTCGCTTCTCAATCATGGCTGTTACTGTTACTAAACTCTCTCAAT
TCCTCCTCTTCCTCTTCCTCTCCCTGTCTTGCAACGCCATCACCCCCTCC
GCCGCTGACTCCATCGGAGTCAACTACGGCGCCATCGCCAACAACCTCCC
GCCACCTCAGCAAGTAGCCAATTTCCTCAAAACCCAAACCACCATAGACC
GCGTCAAGCTCTTCGACGCCAACCCCGAATTCCTCCGCGCCTTCGCCCAC
ACAAACATCCCCGTCACCGTCACAGTCGGCAACGGCGACATACCTGCCCT
CGCAAAACTCCCCGCCGCCCAGTCCTGGGTCGCTAACAACATCCTGCCGC
ATCACCCCCAGACCATCTTCAGATACATCGTCCTCGGCAACGAAATCTTG
GCCACGTCGGATAAAGTCCTCATCGCTTCTCTCCTGCCCGCCATGAGAAC
TCTTAAATCAGCTCTCGATGCTGCCAATCTGAGCAGCGTCCAGGTGTCGA
CACCTCATTCCCTGGGGATTTTATCAACCTCTGAGCCGCCGAGTACCGGA
AGGTTCCGTAAAGGTTACGATAGGCTTATCTTTGCTAGGATTCTCGAGTT
CCACAGACAGACTAAATCCCCGTTTATGGGTAACCCCTACCCGTATTTTG
GGGTTCAGCCTCAGACGCTCAACTACGCTTTGTTTAAACCAAACGCGGCG
TTTTTGAT
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