FC931975

Overview
NameFC931975
Unique NameFC931975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 72/198 (36.36%), Postives = 103/198 (52.02%), Query Frame = 2
Query:  113 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKV--LIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYF--GVQPQ--TLNYALF 685
            +GV YG   NNLPP  +V    K ++ I R++++D N   L A   +NI + + V N D+ +L     A+SWV  N+       +FRYI +GNEI   +     L   +LPAMR +  A+ +A L   ++VST   L ++  S PPS G FR    R     I+ F    +SP + N YPYF     P+  +L YALF
Sbjct:   38 VGVCYGMQGNNLPPVSEVIALYK-KSNITRMRIYDPNRAVLEALRGSNIELILGVPNSDLQSLTNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDV-RSYLDPIIGFLSSIRSPLLANIYPYFTYAYNPRDISLPYALF 233          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 73/202 (36.14%), Postives = 103/202 (50.99%), Query Frame = 2
Query:   95 PSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQ-SWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPY----FGVQPQTLNYALF 685
            P + +SIGV YG  ANNLP    V +  K    I  ++L+  N   L+A   T I V V   N  +  LA  PAA  SWV +NI  + P+  FRY+ +GNE+   + +    +L+PAM+ +  AL AA L  ++V+T  S  IL    PPS G F  G        +++F  +T +P M N YPY    +      + YALF
Sbjct:    1 PPSVESIGVCYGMSANNLPAASTVVSMFKFNG-IKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGATR----NLVPAMKNVHGALVAAGLGHIKVTTSVSQAILGVFSPPSAGSF-TGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALF 195          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 70/197 (35.53%), Postives = 108/197 (54.82%), Query Frame = 2
Query:  113 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQT----LNYALF 685
            IGV  G + ++LPP  +V    KT   I R++L+D NP  L A   +NI + + V N ++  +A   A A +WV NN+  ++    F+YI +GNE+  +        L+PAMR ++ A+  A L+  ++VST    G+L  + PPS G F+  Y+ L++  I+ F    +SP + N YPYF     T    L+YALF
Sbjct:   40 IGVCNGMVGDDLPPQAEVVALYKTNN-IPRMRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNVR-NYANVKFKYIAVGNEVKPSDS--FAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPSIGSFKSEYNALLYP-IIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALF 231          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 72/208 (34.62%), Postives = 110/208 (52.88%), Query Frame = 2
Query:   83 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALF 685
            ++I  + A+SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P + N YPYF         +L Y+LF
Sbjct:   25 SSIEIAGAESIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFVDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 72/208 (34.62%), Postives = 109/208 (52.40%), Query Frame = 2
Query:   83 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALF 685
            ++I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P + N YPYF         +L Y+LF
Sbjct:   25 SSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFVDAIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 66/200 (33.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query:  110 SIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPA--LAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALFKP 691
            +IGV YG +ANNLPP  +V    ++   +  ++++ A+ + L A   + I + + VG  D+ A   A    A +WV +N+ P++P    +YI  GNE+     +    +++PAMR L +AL A  L +++VST      ++ + PPS G F + Y   + AR+L     T +P + N YPYF  +       LNYA F+P
Sbjct:    1 TIGVCYGVVANNLPPANEVVQLYRSNG-LTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWGGDTQ----NIVPAMRNLGAALKAPGLGTIKVSTSIRFDAVTNTFPPSNGVFAQAYMTDV-ARLL---ASTGAPLLTNVYPYFAYKDNPRDIQLNYATFRP 191          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 71/201 (35.32%), Postives = 112/201 (55.72%), Query Frame = 2
Query:  113 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYF------GVQPQTLNYALFKP 691
            IGVN G   +++P P QV   LK Q  I  ++L++A+P  L A A+T I V +++ N  +  + +  + A +WV  N++ H+P T+   + +G+E+L TS       L+ A++ + +AL +ANL   ++VSTP S  ++    PPS   F +  + +I   +L F + T S  M N YPY       GV P  L+YALFKP
Sbjct:   32 IGVNIGTDLSDMPHPTQVVALLKAQE-IRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVL-TSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSLNAVI-VPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIP--LDYALFKP 227          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 72/208 (34.62%), Postives = 109/208 (52.40%), Query Frame = 2
Query:   83 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALF 685
            ++I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P + N YPYF         +L Y+LF
Sbjct:   26 SSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 231          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 2
Query:   83 NAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAK-LPAAQSWVANNILPHHPQTIFRYIVLGNEIL-ATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALF 685
            + I  + A SIGV YG + NNLP   +V    K++  I R++L+D N   L+A   +NI V + + N D+  +A  +  A+ WV  N+    P    +YI +GNEI   T    L + L PAM  +  A+  A L ++++VST   + ++  S PPS G FR    R     I+ F R T++P + N YPYF         +L Y+LF
Sbjct:   25 STIEIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSR-NIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRND-ARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC931975 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 66/197 (33.50%), Postives = 100/197 (50.76%), Query Frame = 2
Query:  116 GVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMGNPYPYFGVQPQ----TLNYALFK 688
            GV YG + NNLP PQ+V   L  Q  I R++++  +PE L A   +NI + + + N ++  LA     A  WV +NI  +     FRY+ +GNE+    +      L+PA+  ++ A+  A L + V+VST    G L+ S PPS G F+  Y       ++ F     +P M N Y YF         +L+YALF+
Sbjct:   35 GVCYGRLGNNLPTPQEVVA-LYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEV--KPEHSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFR 228          
The following BLAST results are available for this feature:
BLAST of FC931975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E13B_HEVBR9.780e-2336.36Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
GUB2_HORVU1.277e-2236.14Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13B_PRUPE1.668e-2235.53Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13B_NICPL6.339e-2234.62Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13E_TOBAC8.279e-2234.62Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13A_HORVU8.279e-2233.00Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E132_ARATH1.081e-2135.32Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E13B_TOBAC1.412e-2134.62Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13F_TOBAC1.844e-2134.62Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13A_SOYBN9.153e-2133.50Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]

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Properties
Property NameValue
Genbank descriptionC34203C02EF PostHarveN Citrus clementina cDNA clone C34203C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931975 ID=FC931975; Name=FC931975; organism=Citrus clementina; type=EST; length=708bp
GCTCCTTCGCTTCTCAATCATGGCTGTTACTGTTACTAAACTCTCTCAAT
TCCTCCTCTTCCTCTTCCTCTCCCTGTCTTGCAACGCCATCACCCCCTCC
GCCGCTGACTCCATCGGAGTCAACTACGGCGCCATCGCCAACAACCTCCC
GCCACCTCAGCAAGTAGCCAATTTCCTCAAAACCCAAACCACCATAGACC
GCGTCAAGCTCTTCGACGCCAACCCCGAATTCCTCCGCGCCTTCGCCCAC
ACAAACATCCCCGTCACCGTCACAGTCGGCAACGGCGACATACCTGCCCT
CGCAAAACTCCCCGCCGCCCAGTCCTGGGTCGCTAACAACATCCTGCCGC
ATCACCCCCAGACCATCTTCAGATACATCGTCCTCGGCAACGAAATCTTG
GCCACGTCGGATAAAGTCCTCATCGCTTCTCTCCTGCCCGCCATGAGAAC
TCTTAAATCAGCTCTCGATGCTGCCAATCTGAGCAGCGTCCAGGTGTCGA
CACCTCATTCCCTGGGGATTTTATCAACCTCTGAGCCGCCGAGTACCGGA
AGGTTCCGTAAAGGTTACGATAGGCTTATCTTTGCTAGGATTCTCGAGTT
CCACAGACAGACTAAATCCCCGTTTATGGGTAACCCCTACCCGTATTTTG
GGGTTCAGCCTCAGACGCTCAACTACGCTTTGTTTAAACCAAACGCGGCG
TTTTTGAT
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