FC931976

Overview
NameFC931976
Unique NameFC931976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SP16H_HUMAN (FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38
Identity = 78/164 (47.56%), Postives = 109/164 (66.46%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNME 559
            R ++K+   F+NF+ +V  L  +      +LEF+ P R+LGF+G P++++  + PTSS LV   E P  V+TL E+E+++ ERV    KNFDM IV+KD+ + V  I++IP +SLD IKEWL++ DLKY E   +LNW  I+KTI DDPE F E GGW FL  E
Sbjct:  773 RHKLKTA--FKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPE 928          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_ASPOR (FACT complex subunit spt16 OS=Aspergillus oryzae GN=spt16 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.903e-38
Identity = 76/165 (46.06%), Postives = 106/165 (64.24%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA 562
            R R     +F+ F  ++ D       K   ++ D P RE+GF GVP++++  I PT+  LV+L E PF+VITL+EIEI +LERV  G KNFD+  VFKDF R  + +++IP  SL+G+K+WLD+ D+ + E  LNLNW  I+KT+  DP  F  DGGW FL  E+
Sbjct:  800 RRRAALDREFKAFAEKIADAG-----KDEGVDVDIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDFHRPPVHVNTIPVESLEGVKDWLDSVDIAFTEGPLNLNWTTIMKTVVSDPYGFFADGGWSFLAAES 959          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_ASPFU (FACT complex subunit spt16 OS=Aspergillus fumigatus GN=spt16 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.903e-38
Identity = 77/165 (46.67%), Postives = 106/165 (64.24%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA 562
            R R     +F+ F  ++ D       K   ++ D P RE+GF GVP++++  I PT+  LV+L E PF+VITL+EIEI +LERV  G KNFD+  VFKDF R  + I++IP  SL+G+K+WLD+ D+ + E  LNLNW  I+KT+  DP  F  DGGW FL  E+
Sbjct:  778 RRRAALDREFKAFAEKIADAG-----KDEGVDVDIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVESLEGVKDWLDSVDIAFTEGPLNLNWTTIMKTVVSDPYGFFADGGWSFLAAES 937          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_EMENI (FACT complex subunit spt16 OS=Emericella nidulans GN=spt16 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37
Identity = 76/165 (46.06%), Postives = 106/165 (64.24%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA 562
            R R     +F+ F  ++ D       K   ++ D P RE+GF GVP++++  I PT+  LV+L E PF+VI+L+EIEI +LERV  G KNFD+  VFKDF R  + I++IP  +L+G+K+WLD+ D+ Y E  LNLNW  I+KT+  DP  F  DGGW FL  E+
Sbjct:  781 RRRAALDREFKAFAEKIADAG-----KDEGVDVDIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVISLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVENLEGVKDWLDSVDIAYTEGPLNLNWTTIMKTVVSDPYGFFADGGWSFLAAES 940          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SP16H_XENLA (FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.299e-37
Identity = 77/161 (47.83%), Postives = 108/161 (67.08%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 550
            R ++K+   F+NF+ +V  L  +      DLEF+ P R+LGF+G P++++  + PTSS LV   E P  V+TL E+E+V+ ERV    KNFDM IV+K++ + V  I++IP +SLD IKEWL++ D+KY E   +LNW  I+KTI DDPE F E GGW FL
Sbjct:  775 RHKLKTA--FKNFIEKVESLTKE------DLEFEIPFRDLGFNGAPYRSTCLLQPTSSSLVNTTEWPPFVVTLDEVELVHFERVQFHLKNFDMVIVYKEYGKKVTMINAIPMASLDPIKEWLNSCDIKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFL 927          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_CAEEL (FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.003e-37
Identity = 77/175 (44.00%), Postives = 104/175 (59.43%), Query Frame = 2
Query:   95 FQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSD 619
            F +F  +V+ L           EFD P   LGF GVP++++  + PT+SCLV L E P  ++TLSE+E+V+ ERV L  KNFDM  +FKD+K     +  IP SS+D IKEWL T D+ Y E   +LNW  ++KTITDD E F E+GGW FLN+E+              Y+P +
Sbjct:  780 FNSFCEKVSRLTND------QFEFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDDLEAFFEEGGWSFLNVESDNEEAMDDSDDSDAYDPEE 948          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_DEBHA (FACT complex subunit SPT16 OS=Debaryomyces hansenii GN=SPT16 PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 3.226e-37
Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 2
Query:  158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNME 559
            ++ D P RELGF GVP ++S   +PT  CL++LI+ P++V+TL EIEI +LERV  G KNFD+  VFKDF + V+ I++IP   L+ +K WL   D+   E ++NLNW  I+KT+  DP +F  DGGW FL  E
Sbjct:  823 VDLDIPFRELGFSGVPFRSSVLCMPTRDCLIQLIDPPYLVVTLEEIEIAHLERVQFGLKNFDLVFVFKDFNKSVVHINTIPMELLEDVKSWLTDVDIPISEGQMNLNWATIMKTVQSDPYQFFADGGWSFLTGE 956          

HSP 2 Score: 26.5646 bits (57), Expect = 3.226e-37
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:   10 GGKRSAY---DPDEVEEEQRERARK 75
            GG++  Y   D DE+++EQ ER RK
Sbjct:  777 GGRKRRYRYGDEDELQQEQEERRRK 801          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_YEAST (FACT complex subunit SPT16 OS=Saccharomyces cerevisiae GN=SPT16 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.210e-36
Identity = 74/163 (45.40%), Postives = 100/163 (61.35%), Query Frame = 2
Query:  158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPS--DVQSDSVF 640
            L  +   R+LGF GVP++++ F +PT+ CLV+LIE PF+VI L E+EI  LERV  G KNFDM  V+KDF + V  I+++P  SLD +K+WL   D+ Y  S +NLNW  I+K++ DDP +F  DGGW FL   +              YE S  DV  +S F
Sbjct:  823 LTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVINLEEVEICILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWLTDMDIPYTVSTINLNWATIMKSLQDDPYQFFLDGGWNFLATGSDDEASDESEEEVSEYEASEDDVSDESAF 985          

HSP 2 Score: 24.6386 bits (52), Expect = 1.210e-36
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 1
Query:    7 GGGKRSAY------DPDEVEEEQRERARK 75
            GGG+R         D DE+E+EQ ER ++
Sbjct:  773 GGGRRGQSRFRRYGDEDELEQEQEERRKR 801          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_ASHGO (FACT complex subunit SPT16 OS=Ashbya gossypii GN=SPT16 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.210e-36
Identity = 74/164 (45.12%), Postives = 99/164 (60.37%), Query Frame = 2
Query:  158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYE-----PSDVQSDS 634
            +E D P R+LGF GVP +++ F +PT  CL++L+E PF+V+ LSE+EI  LERV  G KNFDM  V+KDF + V  I++IP   L+ IK WL   D+ Y  S +NLNW  I+K++ DDP +F  DGGW FL   +              YE     PSD + DS
Sbjct:  819 VEVDHPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVVNLSEVEICILERVQFGLKNFDMVFVYKDFTKPVTHINTIPIEQLEFIKSWLTDVDIPYTVSTINLNWATIMKSLQDDPHQFFLDGGWSFLATGSDDEMSGTSEEEVSEYEVSDEDPSDEEVDS 982          

HSP 2 Score: 23.0978 bits (48), Expect = 1.210e-36
Identity = 11/29 (37.93%), Postives = 17/29 (58.62%), Query Frame = 1
Query:    7 GGGKRSAY------DPDEVEEEQRERARK 75
            G G+R+        D DE+E+EQ ER ++
Sbjct:  769 GNGRRNQMKFRRYGDEDELEQEQEERRKR 797          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_CANAL (FACT complex subunit SPT16 OS=Candida albicans GN=SPT16 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.576e-36
Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 2
Query:  158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 550
            ++ D P RELGF GVP ++S   VPT  CLV+LI+ P++V+TL EIEI +LERV  G KNFD+  VFKDF + V+ I++IP   L+ +K WL   D+   E ++NLNW  I+KT+  DP +F  DGGW FL
Sbjct:  844 VDLDIPFRELGFQGVPFRSSVLCVPTRDCLVQLIDPPYLVVTLEEIEIAHLERVQFGLKNFDLVFVFKDFNKPVVHINTIPVELLEDVKSWLTDVDIPISEGQMNLNWVQIMKTVLADPYQFFIDGGWAFL 974          

HSP 2 Score: 26.5646 bits (57), Expect = 1.576e-36
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:   10 GGKRSAY---DPDEVEEEQRERARK 75
            GG++  Y   D DE+++EQ ER RK
Sbjct:  798 GGRKRKYRYGDEDELQQEQEERRRK 822          
The following BLAST results are available for this feature:
BLAST of FC931976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SP16H_HUMAN6.051e-3847.56FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT... [more]
SPT16_ASPOR7.903e-3846.06FACT complex subunit spt16 OS=Aspergillus oryzae G... [more]
SPT16_ASPFU7.903e-3846.67FACT complex subunit spt16 OS=Aspergillus fumigatu... [more]
SPT16_EMENI1.761e-3746.06FACT complex subunit spt16 OS=Emericella nidulans ... [more]
SP16H_XENLA2.299e-3747.83FACT complex subunit SPT16 OS=Xenopus laevis GN=su... [more]
SPT16_CAEEL3.003e-3744.00FACT complex subunit spt-16 OS=Caenorhabditis eleg... [more]
SPT16_DEBHA3.226e-3749.25FACT complex subunit SPT16 OS=Debaryomyces hanseni... [more]
SPT16_YEAST1.210e-3645.40FACT complex subunit SPT16 OS=Saccharomyces cerevi... [more]
SPT16_ASHGO1.210e-3645.12FACT complex subunit SPT16 OS=Ashbya gossypii GN=S... [more]
SPT16_CANAL1.576e-3651.15FACT complex subunit SPT16 OS=Candida albicans GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203C03EF PostHarveN Citrus clementina cDNA clone C34203C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931976 ID=FC931976; Name=FC931976; organism=Citrus clementina; type=EST; length=692bp
ACGCTAGGTGGTGGAAAGAGATCTGCCTATGACCCAGATGAGGTAGAGGA
AGAACAACGTGAGAGGGCGCGAAAGAATAAAATCAACATGNGACTTCCAG
AACTTTGTGAACCGGGTAAATGATCTATGGGGTCAGCCTCAGTTTAAAGC
ATTTGACCTTGAGTTTGACCAGCCTCTGAGGGAGCTTGGTTTCCATGGTG
TTCCCCACAAAGCATCTGCTTTTATTGTCCCAACATCTAGCTGCCTGGTG
GAGCTGATAGAGACACCTTTTGTGGTAATCACTCTAAGCGAGATTGAGAT
AGTGAACCTGGAGAGAGTTGGTCTCGGGCAGAAGAATTTTGATATGACTA
TAGTATTCAAGGACTTCAAGCGTGATGTCCTTCGAATTGATTCTATTCCG
TCTTCATCACTAGATGGAATCAAAGAGTGGCTCGACACTACAGACCTCAA
GTATTATGAGAGTAGATTAAATTTGAACTGGCGGCCTATACTGAAAACCA
TAACTGACGATCCAGAAAAATTCATAGAGGATGGTGGGTGGGAGTTTCTA
AACATGGAAGCCAGTGACTCAGAATCTGAGAACTCACAAGATTCAGATCA
AGGATATGAGCCTTCAGATGTGCAGTCTGACTCGGTATTTGACGATGAGA
ATGACGACAGTGAATCATTAGTGGAGTCAGAGGATGATGAGG
back to top