FC931976

Overview
NameFC931976
Unique NameFC931976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_NEUCR (FACT complex subunit spt-16 OS=Neurospora crassa GN=spt-16 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36
Identity = 67/135 (49.63%), Postives = 98/135 (72.59%), Query Frame = 2
Query:  158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA 562
            +E D PLR+LGF+GVP +++ +I PT+ CL+++ E PF+VITL +IE+ +LERV  G KNFD+  VFKDF R    I++IP  SL+ +KE+LD++D+ + E  LNLNW  I+KT+T +  +F  DGGW FL  ++
Sbjct:  811 IEVDMPLRDLGFNGVPFRSNVYIQPTTECLIQITEPPFMVITLEDIEVAHLERVQFGLKNFDLVFVFKDFTRPPYHINTIPVESLEDVKEFLDSSDIAFSEGPLNLNWGVIMKTVTANTHQFFLDGGWGFLQNDS 945          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_KLULA (FACT complex subunit SPT16 OS=Kluyveromyces lactis GN=SPT16 PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 2.887e-35
Identity = 69/154 (44.81%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSD 619
            L+ D P R+LGF GVP +++ F +PT  CL++L+E PF+VI L+E+EI  LERV  G KNFDM  V+KD  + V  I+++P   L+ IK WL   D+ Y  S +NLNW  I+K++ DDP +F  DGGW FL   +              YE SD
Sbjct:  820 LDVDSPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVINLNEVEICILERVQFGLKNFDMVFVYKDLTKPVSHINTVPIEQLEFIKTWLTDVDIPYTVSTINLNWSTIMKSLQDDPHQFFLDGGWSFLATGSDDERSDESEEEISEYEASD 973          

HSP 2 Score: 22.7126 bits (47), Expect = 2.887e-35
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:   31 DPDEVEEEQRERARK 75
            D DE+E+EQ ER ++
Sbjct:  784 DEDELEQEQEERRKR 798          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_DROME (FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 2
Query:  158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNME--AXXXXXXXXXXXXXGYEPSDVQSD 631
            +EFD P RELGF G P +++  + PTS  LV L E P  VITL ++E+V+ ERV    +NFDM  VFK++ + V  +++IP + LD +KEWL++ D++Y E   +LNW+ I+KTITDDPE F E GGW FL+ E  +              Y P+D +SD
Sbjct:  801 VEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFERVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWLNSCDIRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGENETAESEEDEAYNPTDAESD 960          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_CANGA (FACT complex subunit SPT16 OS=Candida glabrata GN=SPT16 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.760e-35
Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 2
Query:  167 DQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQSD 631
            +   R+LGF GVP++++ F +PT+ CLV+LIE PF+V+ L EIE+  LERV  G KNFD+  V+KDFK+ V  I++IP  SLD +K+WL   D+ Y  S +NL W  I++++ +DP +F  DGGW FLN  +              YE S+ + +
Sbjct:  822 ESTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVVNLEEIEVAILERVQFGLKNFDLVFVYKDFKKPVTHINTIPIESLDFLKQWLTDMDIPYAISTINLKWSTIMQSLQEDPHQFFLDGGWSFLNANSDEEGSDESEEEISEYEASEEEPE 976          

HSP 2 Score: 22.7126 bits (47), Expect = 3.760e-35
Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1
Query:   31 DPDEVEEEQRERARK 75
            D DE+E+EQ ER ++
Sbjct:  783 DEDELEQEQEERRKR 797          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_USTMA (FACT complex subunit SPT16 OS=Ustilago maydis GN=SPT16 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35
Identity = 70/161 (43.48%), Postives = 102/161 (63.35%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 550
            R R +   +F+ F  R+ +           +  D P RELGF+GVP + +  + PT+ CLV L + PF+VITL+++EIV+LERV  G ++FDM  VF DF R  + + SIP++SLD +K+WLD+ D+   E  +NLNW  I+KT+ +DP  F  +GGW FL
Sbjct:  782 RRRSQLNKEFKVFAERIAEA------SEGRVSVDVPYRELGFNGVPFRTNVLLQPTTDCLVHLTDPPFLVITLTDVEIVHLERVQFGLQSFDMVFVFSDFSRAPMHVTSIPTTSLDDVKQWLDSVDICVTEGAVNLNWGAIMKTVNEDPYDFFAEGGWGFL 936          
The following BLAST results are available for this feature:
BLAST of FC931976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SPT16_NEUCR9.661e-3649.63FACT complex subunit spt-16 OS=Neurospora crassa G... [more]
SPT16_KLULA2.887e-3544.81FACT complex subunit SPT16 OS=Kluyveromyces lactis... [more]
SPT16_DROME3.671e-3545.00FACT complex subunit spt16 OS=Drosophila melanogas... [more]
SPT16_CANGA3.760e-3543.23FACT complex subunit SPT16 OS=Candida glabrata GN=... [more]
SPT16_USTMA6.262e-3543.48FACT complex subunit SPT16 OS=Ustilago maydis GN=S... [more]

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Properties
Property NameValue
Genbank descriptionC34203C03EF PostHarveN Citrus clementina cDNA clone C34203C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931976 ID=FC931976; Name=FC931976; organism=Citrus clementina; type=EST; length=692bp
ACGCTAGGTGGTGGAAAGAGATCTGCCTATGACCCAGATGAGGTAGAGGA
AGAACAACGTGAGAGGGCGCGAAAGAATAAAATCAACATGNGACTTCCAG
AACTTTGTGAACCGGGTAAATGATCTATGGGGTCAGCCTCAGTTTAAAGC
ATTTGACCTTGAGTTTGACCAGCCTCTGAGGGAGCTTGGTTTCCATGGTG
TTCCCCACAAAGCATCTGCTTTTATTGTCCCAACATCTAGCTGCCTGGTG
GAGCTGATAGAGACACCTTTTGTGGTAATCACTCTAAGCGAGATTGAGAT
AGTGAACCTGGAGAGAGTTGGTCTCGGGCAGAAGAATTTTGATATGACTA
TAGTATTCAAGGACTTCAAGCGTGATGTCCTTCGAATTGATTCTATTCCG
TCTTCATCACTAGATGGAATCAAAGAGTGGCTCGACACTACAGACCTCAA
GTATTATGAGAGTAGATTAAATTTGAACTGGCGGCCTATACTGAAAACCA
TAACTGACGATCCAGAAAAATTCATAGAGGATGGTGGGTGGGAGTTTCTA
AACATGGAAGCCAGTGACTCAGAATCTGAGAACTCACAAGATTCAGATCA
AGGATATGAGCCTTCAGATGTGCAGTCTGACTCGGTATTTGACGATGAGA
ATGACGACAGTGAATCATTAGTGGAGTCAGAGGATGATGAGG
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