FC931976
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_NEUCR (FACT complex subunit spt-16 OS=Neurospora crassa GN=spt-16 PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36 Identity = 67/135 (49.63%), Postives = 98/135 (72.59%), Query Frame = 2 Query: 158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA 562 +E D PLR+LGF+GVP +++ +I PT+ CL+++ E PF+VITL +IE+ +LERV G KNFD+ VFKDF R I++IP SL+ +KE+LD++D+ + E LNLNW I+KT+T + +F DGGW FL ++ Sbjct: 811 IEVDMPLRDLGFNGVPFRSNVYIQPTTECLIQITEPPFMVITLEDIEVAHLERVQFGLKNFDLVFVFKDFTRPPYHINTIPVESLEDVKEFLDSSDIAFSEGPLNLNWGVIMKTVTANTHQFFLDGGWGFLQNDS 945
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_KLULA (FACT complex subunit SPT16 OS=Kluyveromyces lactis GN=SPT16 PE=3 SV=2) HSP 1 Score: 147.132 bits (370), Expect = 2.887e-35 Identity = 69/154 (44.81%), Postives = 94/154 (61.04%), Query Frame = 2 Query: 158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSD 619 L+ D P R+LGF GVP +++ F +PT CL++L+E PF+VI L+E+EI LERV G KNFDM V+KD + V I+++P L+ IK WL D+ Y S +NLNW I+K++ DDP +F DGGW FL + YE SD Sbjct: 820 LDVDSPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVINLNEVEICILERVQFGLKNFDMVFVYKDLTKPVSHINTVPIEQLEFIKTWLTDVDIPYTVSTINLNWSTIMKSLQDDPHQFFLDGGWSFLATGSDDERSDESEEEISEYEASD 973 HSP 2 Score: 22.7126 bits (47), Expect = 2.887e-35 Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1 Query: 31 DPDEVEEEQRERARK 75 D DE+E+EQ ER ++ Sbjct: 784 DEDELEQEQEERRKR 798
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_DROME (FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35 Identity = 72/160 (45.00%), Postives = 101/160 (63.12%), Query Frame = 2 Query: 158 LEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNME--AXXXXXXXXXXXXXGYEPSDVQSD 631 +EFD P RELGF G P +++ + PTS LV L E P VITL ++E+V+ ERV +NFDM VFK++ + V +++IP + LD +KEWL++ D++Y E +LNW+ I+KTITDDPE F E GGW FL+ E + Y P+D +SD Sbjct: 801 VEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFERVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWLNSCDIRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGENETAESEEDEAYNPTDAESD 960
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_CANGA (FACT complex subunit SPT16 OS=Candida glabrata GN=SPT16 PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 3.760e-35 Identity = 67/155 (43.23%), Postives = 98/155 (63.23%), Query Frame = 2 Query: 167 DQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQSD 631 + R+LGF GVP++++ F +PT+ CLV+LIE PF+V+ L EIE+ LERV G KNFD+ V+KDFK+ V I++IP SLD +K+WL D+ Y S +NL W I++++ +DP +F DGGW FLN + YE S+ + + Sbjct: 822 ESTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVVNLEEIEVAILERVQFGLKNFDLVFVYKDFKKPVTHINTIPIESLDFLKQWLTDMDIPYAISTINLKWSTIMQSLQEDPHQFFLDGGWSFLNANSDEEGSDESEEEISEYEASEEEPE 976 HSP 2 Score: 22.7126 bits (47), Expect = 3.760e-35 Identity = 8/15 (53.33%), Postives = 12/15 (80.00%), Query Frame = 1 Query: 31 DPDEVEEEQRERARK 75 D DE+E+EQ ER ++ Sbjct: 783 DEDELEQEQEERRKR 797
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_USTMA (FACT complex subunit SPT16 OS=Ustilago maydis GN=SPT16 PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 6.262e-35 Identity = 70/161 (43.48%), Postives = 102/161 (63.35%), Query Frame = 2 Query: 68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 550 R R + +F+ F R+ + + D P RELGF+GVP + + + PT+ CLV L + PF+VITL+++EIV+LERV G ++FDM VF DF R + + SIP++SLD +K+WLD+ D+ E +NLNW I+KT+ +DP F +GGW FL Sbjct: 782 RRRSQLNKEFKVFAERIAEA------SEGRVSVDVPYRELGFNGVPFRTNVLLQPTTDCLVHLTDPPFLVITLTDVEIVHLERVQFGLQSFDMVFVFSDFSRAPMHVTSIPTTSLDDVKQWLDSVDICVTEGAVNLNWGAIMKTVNEDPYDFFAEGGWGFL 936 The following BLAST results are available for this feature:
BLAST of FC931976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 25
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931976 ID=FC931976; Name=FC931976; organism=Citrus clementina; type=EST; length=692bpback to top |