FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 7.805e-17
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            ADENF  KH   G+LSMAN GP TNG QFF+ T  T +L+GKHVVF QVV  MD+V  IE   +   + ++ V+I  CG++
Sbjct:  101 ADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGEM 181          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.331e-16
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNK-PVVIADCGQLS 248
            DE F   H+ P +LSMAN GP TNGSQFF+    T  LDGKHVVF +V+    VV  IE   +++G   K PVVIADCGQLS
Sbjct:   93 DEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.739e-16
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENF  KH  P +LSMAN GPGTNGSQFF+ T  T  LDGKHVVF +V+    VV A+E + + S R  +  VIA CG+L+
Sbjct:   92 DENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNK-PVVIADCGQL 245
            DENFE KH GPG+LSMAN G  TNG QFF+    T++LD KHVVF +V+  M  V  IE V + +    K P+V+  CGQL
Sbjct:  103 DENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.966e-16
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KH   G+LSMAN GP TNGSQFF+ T  T  LDGKHVVF QV+  + V   +E V  +  +  K  VIA+CG+L
Sbjct:  105 DENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.966e-16
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVG-SSSGRTNKPVVIADCGQL 245
            DENFE KH   G+LSMAN GP TNGSQFF+ T  T  LDGKHVVF +V   M VV +IE V        ++ VVI DCG++
Sbjct:   93 DENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEI 173          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KH   G+LSMAN GP TNGSQFF+ T  T  LDGKHVVF QV+  + V   +E V  +  +  K  VIA+CG+L
Sbjct:  105 DENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGEL 184          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCG 239
            ADENF+ KHT P +LSMAN GP TNGSQFF+      WLDGKHVVF +VV   D +   +K  S  G+    + I D G
Sbjct:   82 ADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGKPKTTIKIVDSG 160          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.874e-16
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSG-RTNKPVVIADCGQLS 248
            ADENF+ KH G G LSMAN G  TNGSQFF+ T  T WLDG+HVVF +++  MDVV  IE+     G R  + V+IA  G ++
Sbjct:  109 ADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIA 191          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSS-SGRTNKPVVIADCGQL 245
            DENF+ +HT  G+LSMAN G  TNGSQFF+ T  T WLDGKHVVF +V+   D+V  I+ V      R  K V I  CG+L
Sbjct:  116 DENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKIVKCGEL 196          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PPIH_ASPFU7.805e-1751.85Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPID_AMAMU1.331e-1656.10Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PPID_RHIOR1.739e-1655.56Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
CYP11_CAEEL2.271e-1653.09Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPID_MOUSE2.966e-1653.7540 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
CYP40_ARATH2.966e-1655.56Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPID_RAT3.874e-1653.7540 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPIA_PARPR3.874e-1651.90Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
CYP5_CAEEL3.874e-1653.01Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
PPIB_ARTBE5.059e-1653.09Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
back to top