FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.608e-16
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV-*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KH   G++SMAN GP TNGSQFF+ T  TEWLDG+HVVF ++       V AIE +GSS GR +K   I D G L
Sbjct:   99 DENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGRPSKIAKITDIGLL 178          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.630e-16
Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSS-GRTNKPVVIADCGQLSYI 254
            DENF+ KH  PG LSMAN G  TNGSQFF+ T    WLDGKHVVF +V+  MDVV  IE V + S     K V+I + G+L  +
Sbjct:  116 DENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGELETV 199          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.127e-15
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF+ KHTGPG+LSMAN G  TN SQF +     E LD KHVVF  V   MD V  IE  GS  G   + + I +CGQ+
Sbjct: 3145 DENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 3224          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.472e-15
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNK-PVVIADCGQL 245
            DENF+ KHT P  LSMAN G  TNGSQFF+ T  T WLDGKHVVF +V+   D+V AIE   + +    K  + IAD G++
Sbjct:  113 DENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEI 193          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_RHIOR (Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus oryzae GN=cyp7 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSS-SGRTNKPVVIADCGQL 245
            ADENF +KHTG G+LSMAN GP +NG QFF+     ++LDGKHVVF ++V  +  +  IE V +  + R   PV I +CGQ+
Sbjct:   97 ADENFIEKHTGAGLLSMANSGPNSNGCQFFITCDACDFLDGKHVVFGRLVDGLLTLRKIENVATGPNNRPKLPVKITECGQM 178          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCG 239
            DENFE KH  P +LSMAN GP TNGSQFF+ T  T  LDGKHVVF +V+     V  IE + + +     PVVI +CG
Sbjct:   88 DENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENLETKNDDPVVPVVIEECG 165          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 81.6481 bits (200), Expect = 1.923e-15
Identity = 43/80 (53.75%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KH   G+LSMAN G  TNGSQFF+ T  T  LDGKHVVF QV+  M V   +E V     +  K  VIA+CG+L
Sbjct:  105 DENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.279e-15
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIE--KVG-SSSGRTNKPVVIADCGQL 245
            DENF  KH  PG+LSMAN GP TNGSQFF+ T  T +LD KHVVF +V   MDVV  +E  K G       N  VVI+ CG++
Sbjct:  100 DENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.283e-15
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSG-RTNKPVVIADCGQLS 248
            DE F  KH  P +LSMAN GP TNGSQFF+ T  T  LDGKHVVF +V+    VV  IE + + SG R  K  +I DCG+L+
Sbjct:   99 DEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELT 180          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.283e-15
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPV---VIADCGQL 245
            DENF+  H  P +LSMAN GP TNGSQFF+ T  T  LDGKHVVF +V+    +V  +E+  S  G  ++PV    IADCG+L
Sbjct:   96 DENFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVIEGKSIVRQLER--SEKGANDRPVEDWKIADCGEL 176          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PPIA_NEOCA6.608e-1655.56Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
CYPD_YEAST8.630e-1653.57Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
RBP2_HUMAN1.127e-1552.50E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
PPIB_YARLI1.472e-1553.09Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIH_RHIOR1.923e-1550.00Peptidyl-prolyl cis-trans isomerase H OS=Rhizopus ... [more]
PPID_SCHPO1.923e-1553.8540 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
PPID_BOVIN1.923e-1553.7540 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPIH_GIBZE3.279e-1554.22Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPID_GIBZE4.283e-1553.66Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPID_CANAL4.283e-1551.81Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]

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Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
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