FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:626..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIL1_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Neurospora crassa GN=cyp-1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 3
Query:   24 KHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV 170
            KHTG G+LSMAN GP TNGSQFF+    T WLDGKH +F +V   M V+
Sbjct:   82 KHTGAGVLSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVKKGMGVI 130          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIL1_GIBZE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibberella zeae GN=CYP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 3
Query:   24 KHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVG-SSSGRTNKPV 221
            KHTG GILSMAN GP TNGSQFFV    T WLDGKH +F +V   M     I+++G   +G  ++PV
Sbjct:   82 KHTGAGILSMANAGPNTNGSQFFVTLAPTPWLDGKHTIFGRVKSGMG---TIKRMGLVKTGSEDRPV 145          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIL1_EMENI (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Emericella nidulans GN=cyp1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 3
Query:   24 KHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV 170
            KHTG GILSMAN GP TNGSQFF+    T WLDGKH +F +V   M ++
Sbjct:   82 KHTGAGILSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRVKSGMRII 130          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIL1_ASPFU (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspergillus fumigatus GN=cyp1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.200e-11
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 3
Query:   24 KHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV 170
            KHTG G+LSMAN GP TNGSQFF+    T WLDGKH +F +V   M V+
Sbjct:   82 KHTGAGVLSMANSGPNTNGSQFFITLAPTPWLDGKHTIFGRVKSGMRVI 130          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSS-GRTNKPVVIADCGQL 245
            DE F  KH  P ++SMAN GP TNGSQFF+ T     L+  HVVF +VV   +VV  IE + ++S  R    VVI +CG+L
Sbjct:   96 DEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.873e-11
Identity = 35/68 (51.47%), Postives = 43/68 (63.24%), Query Frame = 3
Query:   18 EKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPV 221
            E +H  P  +SMAN GP TNGSQFF+    T WLD KH VF +V   MDVV +IE   +   +TNKP+
Sbjct:  554 EFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIE--SAKVDKTNKPL 619          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 39/81 (48.15%), Postives = 46/81 (56.79%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIE-KVGSSSGRTNKPVVIADCGQL 245
            DENF  KH  P +LSMAN G  TNGSQ F+    T  LDGKHVVF +V+    +V  IE      + +  K V I DCG L
Sbjct:   96 DENFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKIEDCGVL 176          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.400e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVG-SSSGRTNKPVVIADCGQL 245
            DE F+ KH+ P +LSMAN GP +N SQFF+ T      +GKHVVF +VV   +VV  I+ +      +    V+I++CG+L
Sbjct:   94 DEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PPIL1_NEUCR1.684e-1161.22Peptidyl-prolyl cis-trans isomerase-like 1 OS=Neur... [more]
PPIL1_GIBZE1.684e-1153.73Peptidyl-prolyl cis-trans isomerase-like 1 OS=Gibb... [more]
PPIL1_EMENI2.200e-1161.22Peptidyl-prolyl cis-trans isomerase-like 1 OS=Emer... [more]
PPIL1_ASPFU2.200e-1161.22Peptidyl-prolyl cis-trans isomerase-like 1 OS=Aspe... [more]
CYP1_BRUMA2.873e-1148.15Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
CYP15_RHIOR2.873e-1151.47Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
PPID_KLULA4.900e-1148.15Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]
CYP9_CAEEL6.400e-1143.21Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
back to top