FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:626..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 1.087e-26
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KHTGPGILSMAN GP TNGSQFF+CT  TEWLDGKHVVF +V   M++V A+E+ GS +G+T+K + IADCGQL
Sbjct:   85 DENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_RAT (Peptidyl-prolyl cis-trans isomerase A OS=Rattus norvegicus GN=Ppia PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.419e-26
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KHTGPGILSMAN GP TNGSQFF+CT  TEWLDGKHVVF +V   M +V A+E+ GS +G+T+K + I+DCGQL
Sbjct:   85 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMSIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 4.129e-26
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KHTGPGILSMAN GP TNGSQFF+CT  TEWLDGKHVVF +V   M +V A+E  GS +G+T+K + IA+CGQL
Sbjct:   85 DENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIVEAMEHFGSENGKTSKKITIANCGQL 164          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.199e-26
Identity = 56/81 (69.14%), Postives = 63/81 (77.78%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DE F +K   PG+LSMAN GP TNGSQFF+CT  T WLDGKHVVF QVV  MDVV AIEKVG+ +G T+K V +ADCGQLS
Sbjct:   92 DEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.496e-25
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF++KHTGPG+LSMAN GP TNGSQFF+CT  T WLDGKHVVF +VV  +D+V  +E  GSSSG      +IADCGQL
Sbjct:   92 DENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_BLAGE (Peptidyl-prolyl cis-trans isomerase OS=Blattella germanica GN=CYPA PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.565e-25
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF+ KHTGPGIL MAN GP TNGSQFF+ T  T WLD +HVVF  VV  MDVV  +E +GS SG+TNK + + DCGQ+
Sbjct:   85 DENFQLKHTGPGILWMANAGPNTNGSQFFITTAKTSWLDNRHVVFGSVVEGMDVVKKLESLGSQSGKTNKKIAVVDCGQI 164          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.565e-25
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF++KHTGPG+LSMAN G  TNGSQFF+CT  T WLDGKHVVF +V+  MDVV AIE  GS  G  + P VIADCG++
Sbjct:   92 DENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP1_CAEEL (Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhabditis elegans GN=cyn-1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.565e-25
Identity = 55/80 (68.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF+ KHTGPG LSMAN GP TNGSQFF+CT +T WLDG HVVF QV   M VV  IEK+GS SG   K V IADCG+L
Sbjct:  110 DENFDLKHTGPGCLSMANAGPNTNGSQFFICTVDTPWLDGGHVVFGQVTDGMSVVKKIEKMGSRSGAPAKTVTIADCGEL 189          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.565e-25
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF+ KHTGPGILSMAN GP TNGSQFF+CT  T WLDGKHVVF +VV   +VV A+E VGS  G  ++ VVI DCG+L
Sbjct:   92 DENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIE_RHIOR (Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus oryzae GN=cyp10 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.962e-25
Identity = 54/80 (67.50%), Postives = 62/80 (77.50%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KHTGPG LSMAN G  TNGSQFF+CT  T WLDGKHVVF QVV  M+VV  +E+ GS+SG+ +K VVI DCG+L
Sbjct:  236 DENFVLKHTGPGTLSMANAGSNTNGSQFFICTEKTTWLDGKHVVFGQVVSGMNVVREMERCGSASGKPSKRVVIVDCGEL 315          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PPIA_AOTTR1.087e-2668.75Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
PPIA_RAT1.419e-2667.50Peptidyl-prolyl cis-trans isomerase A OS=Rattus no... [more]
PPIA_RABIT4.129e-2667.50Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
CYPH_MAIZE9.199e-2669.14Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYP7_CAEEL3.496e-2566.25Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
PPIA_BLAGE4.565e-2563.75Peptidyl-prolyl cis-trans isomerase OS=Blattella g... [more]
CYP2_CAEEL4.565e-2566.25Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
CYP1_CAEEL4.565e-2568.75Peptidyl-prolyl cis-trans isomerase 1 OS=Caenorhab... [more]
CP19C_ARATH4.565e-2567.50Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]
PPIE_RHIOR5.962e-2567.50Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus ... [more]

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Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
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