FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.787e-25
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            ADENF  KHT PGILSMAN G  TNGSQFF+CT  T WLDGKHVVF  V   +D++  +E  GS SG+T+K + IADCGQL
Sbjct:   84 ADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYGSDSGKTSKKITIADCGQL 164          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.735e-24
Identity = 54/81 (66.67%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            ADENF+ KH G G LSMAN G  TNGSQFF+C   T+WLDGKHVVF  V   MDVV  +E  GS SG+T KPVVIA+CGQL
Sbjct:   99 ADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.469e-23
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQ 242
            DEN  +KHTG GILSMAN GP TNGSQFF+CT  TEWLDGKHV F +V  R+++V A+E  G  + +T+K + IADCGQ
Sbjct:   85 DENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.918e-23
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENFE KHTG GILSMAN G  TNGSQFF+CT  T WLD KHVVF +VV  +DVV  IE  GS SG+T+K +++A+ G L
Sbjct:  148 DENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYGSQSGKTSKKIIVANSGSL 227          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.581e-23
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF+ +H G G+LSMAN GP TNGSQFF+CT   +WLDGKHVVF +VV   +VV  +E VGS SG+  +PV+I+ CG+L
Sbjct:  193 DENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PAL4B_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4B OS=Homo sapiens GN=PPIAL4B PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.581e-23
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQ 242
            DEN  +KHTG GILSMAN GP TNGSQFF+C   TEWLDGKHV F +V  R+++V A+E  G  + +T+K + IADCGQ
Sbjct:   85 DENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQ 163          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.581e-23
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSG-RTNKPVVIADCGQL 245
            DENF+  H GPG+LSMAN GP TNGSQFF+CT  T WLDG+HVVF QV+  M+VV  IE+  +  G R  K VVIADCGQL
Sbjct:  174 DENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.243e-22
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF+ +H G G+LSMAN GP TNGSQFF+CT   +WLDGKHVVF +VV   +VV  +E VGS SG+  +PV I+ CG+L
Sbjct:   99 DENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.121e-22
Identity = 52/81 (64.20%), Postives = 58/81 (71.60%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            ADENF+ KHTGPG+LSMAN G  TNGSQFF+ T  T WLDG+HVVF +VV  MDVV  IE  G  SG     VVIAD G+L
Sbjct:  119 ADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGEL 199          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.770e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQ 242
            DENF  KHTGPG+LSMAN GP TNGSQFF+    T+WLDGKHVVF +V   +DV+  IE  GS  G+  + V+IADCG+
Sbjct:  221 DENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 299          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PPIA_HEMPU7.787e-2564.20Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
PPIA_DICDI1.735e-2466.67Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PAL4A_HUMAN1.469e-2362.03Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPIA_DROME1.918e-2363.75Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPIE_SCHMA5.581e-2360.00Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PAL4B_HUMAN5.581e-2360.76Peptidylprolyl cis-trans isomerase A-like 4B OS=Ho... [more]
CP20B_ARATH5.581e-2364.20Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIE_SCHJA1.243e-2260.00Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
CP19D_ARATH2.121e-2264.20Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIE_HUMAN2.770e-2260.76Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
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