FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:626..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIE_PONAB (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.617e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQ 242
            DENF  KHTGPG+LSMAN GP TNGSQFF+    T+WLDGKHVVF +V   +DV+  IE  GS  G+  + V+IADCG+
Sbjct:  221 DENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEARGSKDGKPKQKVIIADCGE 299          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIE_MOUSE (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.724e-22
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQ 242
            DENF  KHTGPG+LSMAN GP TNGSQFF+    T+WLDGKHVVF +V   +DV+  IE  GS  G+  + V+IADCG+
Sbjct:  221 DENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVMIADCGE 299          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.724e-22
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSG-RTNKPVVIADCGQL 245
            ADENF+ +HTGPGILSMAN G  TNGSQFF+ T  T WLDG+HVVF +V+  MDVV AIE   +  G R   PV+IADCG+L
Sbjct:  110 ADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNK 215
            DENF+ KH GPG+LSMAN GP TNGSQFF+CT  T+WLDGKHVVF  V   MDVV  IE  GS SG+T+K
Sbjct:  128 DENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQ 242
            DENF  KHTGPG+LSMAN GP TNGSQFF+    T+WLDGKHVVF ++   +DV+  IE  GS  G+  + V+I+DCG+
Sbjct:  221 DENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVLRQIEAQGSKDGKPKQKVIISDCGE 299          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_CANAL (Peptidyl-prolyl cis-trans isomerase OS=Candida albicans GN=CYP1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.375e-21
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            ADENF K+H  PG+LSMAN GP TNGSQFF+ T    WLDGKHVVF +V   +D+V  IE  GS SG T+K +VI + GQL
Sbjct:   82 ADENFVKRHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTDGLDIVKKIESFGSGSGATSKKIVIEESGQL 162          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.375e-21
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            ADENF+ KHTGPG LSMAN G  TNGSQFF+ T  T WLDG+HVVF +VV  MDVV  +E  G+ SG     VVI D G+L
Sbjct:  122 ADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.795e-21
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KH+ P +LSMAN G  TNGSQFF+ T  T WLDGKHVVF +V    DVV  +E VGSSSG+T++ V+I DCGQL
Sbjct:   83 DENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVVKDMEAVGSSSGKTSQEVLITDCGQL 162          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIA1_RHIOR (Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus oryzae GN=cyp2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.345e-21
Identity = 49/80 (61.25%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KHTGPG LSMAN GP TNGSQFF+ T    WLDGKHVVF +V   MDVV  IE +GS +G     ++I +CGQL
Sbjct:   85 DENFTLKHTGPGDLSMANAGPNTNGSQFFITTIKCSWLDGKHVVFGRVTEGMDVVQNIESLGSPNGTPRAKIIIDNCGQL 164          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.822e-21
Identity = 48/78 (61.54%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCG 239
            DENF  KH  PG+LSMAN GP TNGSQFF+ T  T WLDGKHVVF +V   MDVV  +E +GS+SG T   +VI  CG
Sbjct:   83 DENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PPIE_PONAB3.617e-2260.76Peptidyl-prolyl cis-trans isomerase E OS=Pongo abe... [more]
PPIE_MOUSE4.724e-2260.76Peptidyl-prolyl cis-trans isomerase E OS=Mus muscu... [more]
PPIB_ORPSP4.724e-2263.41Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIF_BOVIN8.059e-2268.57Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIE_BOVIN8.059e-2258.23Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPIA_CANAL1.375e-2160.49Peptidyl-prolyl cis-trans isomerase OS=Candida alb... [more]
CP20A_ARATH1.375e-2161.73Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIA_ECHGR1.795e-2162.50Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPIA1_RHIOR2.345e-2161.25Peptidyl-prolyl cis-trans isomerase A1 OS=Rhizopus... [more]
CYPH_SCHPO6.822e-2161.54Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
back to top