FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_EMENI (Peptidyl-prolyl cis-trans isomerase H OS=Emericella nidulans GN=cyp3 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            +DENF  +H  PG+LSMAN GP TNG QFF+ T  T +L+GKHVVF QV+  MD+V  IE   ++  + N+ VVI  CG++
Sbjct:  103 SDENFTLRHDRPGLLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVIDGMDIVRMIENTRTTRDKPNQDVVIIQCGEM 183          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSS-GRTNKPVVIADCGQL 245
            DENF+ KH GPG +SMAN G  TNGSQFF+ T  T WLDGKHVVF +V+  MDVV  +E   + S  +  K V IADCG +
Sbjct:  116 DENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTI 196          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTN--KPVVIADCGQL 245
            DENF+ KH GPG +SMAN G  TNGSQFF+ T  T WLDGKHVVF +V+  MDVV  +E    + GR    K V IADCG++
Sbjct:  125 DENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVEST-KTDGRDKPLKDVTIADCGKI 205          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENFE KH  P +LSMAN GPGTNGSQFF+ T  T  LDGKHVVF +V+    +V  IE + + + +    V I DCG+LS
Sbjct:  100 DENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPB_VICFA (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSS--SGRTNKPVVIADCGQL 245
            DE+F+ KH GPG+LSMAN GP TNGSQFF+CT  T WLD +HVVF  V+  +DVV  +E   +S       KP  IA  G+L
Sbjct:  163 DESFDLKHVGPGVLSMANAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQLESQETSKLDNSPKKPCKIAKSGEL 244          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.220e-18
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIE 182
            DENF  KHTGPGILSMAN GP TNGSQFF+CT  T WLD KHVVF QV+  M +V  +E
Sbjct:  176 DENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLE 234          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENFE KH  P +LSMAN GPGTNGSQFF+ T  T  LDGKHVVF +V+    VV  IE + + + +    V IA+CG+L+
Sbjct:   95 DENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGELT 175          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENFE KH  P +LSMAN GPGTNGSQFF+ T  T  LDGKHVVF +V+    VV  +E + + + +  K V I +CG+L+
Sbjct:   94 DENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNK---PVVIADCGQL 245
            ADENF+ +H+ PG+LSMAN GP TNG QFF+     +WLDGKHVVF +++  + V+  IE V   +G  NK   PVVI+ CG++
Sbjct:   96 ADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNK---PVVIADCGQL 245
            ADENF+ +H+ PG+LSMAN GP TNG QFF+     +WLDGKHVVF +++  + V+  IE V   +G  NK   PVVI+ CG++
Sbjct:   96 ADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PPIH_EMENI7.060e-1851.85Peptidyl-prolyl cis-trans isomerase H OS=Emericell... [more]
PPIB_CHICK7.060e-1856.79Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIB_BOVIN7.060e-1857.32Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
PPID_ASPFU9.220e-1854.32Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CYPB_VICFA9.220e-1853.66Peptidyl-prolyl cis-trans isomerase, chloroplastic... [more]
CP20C_ARATH9.220e-1869.49Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPID_EMENI1.573e-1754.32Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_ASPOR1.573e-1753.09Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIH_HUMAN2.683e-1751.19Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN2.683e-1751.19Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
back to top