FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIE-KVGSSSGRTNKPVVIADCGQL 245
            DENF+ +H G G LSMAN GP TNGSQFF+ T  T WLDGKHVVF +VV  M++V  IE +   S  R  K + IA CG +
Sbjct:  118 DENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHI 198          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 46/81 (56.79%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSS-GRTNKPVVIADCGQL 245
            DENF+ KH G G LSMAN GP TNG+QFF+ T    WLDGKHVVF +VV  M VV  IE + + S  R  K V IA+CG +
Sbjct:  118 DENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKIANCGHI 198          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSG-RTNKPVVIADCGQL 245
            DENF+ +H GPG LSMAN G  TNGSQFF+ T  T WLDGKHVVF +++  MDVV  IE     +G R  + VVIA+ G +
Sbjct:  107 DENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVIANAGHI 187          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF+ KHTGPG+LSMAN G  TN SQFF+     E LD KHVVF  V   MD V  IE  GS  G  ++ ++I +CGQ+
Sbjct: 1006 DENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVSRRIIITECGQI 1085          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 45/83 (54.22%), Postives = 57/83 (68.67%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKP---VVIADCGQL 245
            DENF+ KHTGPG+LSMAN GP TNG QFF+ T   E+LDGKH VF +V+  +  V  IE V   +G  N+P   V IA+CG++
Sbjct:   99 DENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENV--PTGANNRPKLQVRIAECGEM 179          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF+ KHTGPG+LSMAN G  TN SQFF+     E LD KHVVF  V   MD V  IE  GS  G  ++ + I +CGQL
Sbjct: 2974 DENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKGSVSRRICITECGQL 3053          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKP---VVIADCGQL 245
            ADENF  KH  PG+LSMAN GP TNGSQFF+ T  T +LDGKHVVF +VV  MDVV  +E   +     + P   VVIA CG++
Sbjct:   99 ADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGEM 182          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF  KH  PG+LSMAN GP TNG QFF+ T  T +L+ KHVVF QVV  MDVV  IE   ++  + N+ V I  CG++
Sbjct:  102 DENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENFE KH  P +LSMAN GPGTNGSQFF+ T  T  LDGKHVVF +V+    +V  IE + ++S R ++ V I+  G LS
Sbjct:   91 DENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLVRRIENIPTTSDRPDQAVTISSAGVLS 171          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 5.976e-17
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSS-GRTNKPVVIADCGQL 245
            DENF+ KH GPG +SMAN G  TNGSQFF+ T  T WLDGKHVVF +V+  MDVV  +E   + S  +  K V+I D G++
Sbjct:  125 DENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKI 205          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
PPIB_SCHMA2.683e-1755.56Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIB_SCHJA2.683e-1756.79Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
CYP6_CAEEL2.683e-1755.56Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
RBP2_BOVIN4.576e-1753.75E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPIH_CRYNE4.576e-1754.22Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
RBP2_MOUSE5.976e-1755.00E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIH_NEUCR5.976e-1755.95Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
PPIH_ASPOR5.976e-1753.75Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPID_CRYNE5.976e-1754.32Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPIB_MOUSE5.976e-1754.32Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
back to top