FC931994

Overview
NameFC931994
Unique NameFC931994
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 51/171 (29.82%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  147 KKEEIEDKVVWITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTALEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSASNTL*MG 659
            ++  +++KV  +T ++ GIG  IA++LA+ GA +++S+R    ++R    L G+       +  +  A   + L     K        GVD +I NAA      + ++V EE     ++VNV  T  LT+ + P M +RG G  V++SS A  +P P    Y+ S T  +G
Sbjct:    8 RRNPLDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKLHG-----GVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLG 173          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: MKAR_CHAGB (3-ketoacyl-CoA reductase OS=Chaetomium globosum GN=CHGG_04239 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 48/155 (30.97%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  180 ITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTA-LEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSAS 641
            +TGAS G+G+  A QLA  G  L+L +R  ++L+ +   L  + +  + K L +D +   D+     E+      G  +  +++N           LE + E L+  I +N LGT+  T+++AP + +R KG  + M S AG  P P  A YS S
Sbjct:   71 VTGASDGLGKEFASQLAAKGFNLVLVSRTQSKLDTLARHLELRWSGLQTKTLAMDYSQDNDA---DYERLAELISGLDIGILVNNVGRSHSIPVPFLETAREELQDIITINCLGTLKTTQVVAPILAKRKKGLILTMGSFAGVMPTPYLATYSGS 222          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 48/178 (26.97%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  126 LMSKKHVKKEEIEDKVVWITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTALEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSASNTL*MG 659
            + S    +++ + +KV  +T ++ GIG  IA++LA+ GA +++S+R    +++    L G+       +  +  A   + L     K        G+D ++ NAA      + ++V+EE    T+++NV     +T+ + P M +RG G  V++SS A  +P+PG + Y+ S T  +G
Sbjct:    1 MASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHG-----GIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLG 173          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 48/178 (26.97%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  126 LMSKKHVKKEEIEDKVVWITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTALEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSASNTL*MG 659
            + S    +++ + +KV  +T ++ GIG  IA++LA+ GA +++S+R    +++    L G+       +  +  A   + L     K        G+D ++ NAA      + ++V+EE    T+++NV     +T+ + P M +RG G  V++SS A  +P+PG + Y+ S T  +G
Sbjct:    1 MASSGMTRRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHG-----GIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLG 173          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: MKAR_ASPNC (3-ketoacyl-CoA reductase OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An02g03570 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  180 ITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTALEVS-EESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSAS 641
            +TGAS G+G+  A QLAR    ++L +R A++L+ +  ++  K    + K L +D A  +DS     EK +       V  +++N        T   ++ E+ +   + +N LGT+  T+L+ P M++R +G  + M S  G  P P  A YS S
Sbjct:   72 VTGASDGLGKEFALQLARADFNILLVSRTASKLDTLSNEITTKFPSVQTKTLAMDFARNQDS---DYEKLKELVDELDVSVLVNNVGKSHSIPTPFALTPEDEMTDIVTINCLGTLRATQLVVPGMMQRKRGLVLTMGSFGGLLPTPLLATYSGS 223          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: DRS7B_MOUSE (Dehydrogenase/reductase SDR family member 7B OS=Mus musculus GN=Dhrs7b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 55/169 (32.54%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  150 KEEIEDKVVWITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGK-----HAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTALEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSAS 641
            K  + + VV +TGA+ G+G   AK     GAKL+L  RN   LE +  +L G      H P    ++  DLA        A E  + F     VD +I+NA     + T  +   +  +  + +N  G ++LT+ L P M+ R +GH V +SS  GK   P ++ YSAS
Sbjct:   47 KAYLRNAVVVVTGATSGLGRECAKVFHAAGAKLVLCGRNVKALEELSRELAGSSQGQTHQPF---VVTFDLADPGTIAAAAAEILQCF---GYVDVLINNAGISY-RGTISDTIVDVDRKVMEINYFGPVALTKALLPSMVERKQGHIVAISSIQGKISIPFRSAYSAS 208          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: DRS7B_DANRE (Dehydrogenase/reductase SDR family member 7B OS=Danio rerio GN=dhrs7b PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 51/165 (30.91%), Postives = 78/165 (47.27%), Query Frame = 3
Query:  147 KKEEIEDKVVWITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTALEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSAS 641
            ++  I+DKVV ITGAS G+G+  A+     GA+LIL  R+   L+ V E+L  K         P  +     +  V    A       G   ++ N A    +   L+      +  +  N  G ++LT+ + P M+ RG GH VV+SS  GK   P ++ Y+AS
Sbjct:   31 RRPNIQDKVVVITGASSGLGKECARVFHAAGARLILCGRDQRRLQEVVEELGNKTYGKTKTYTPCTVTFDLSNTSVVCSAAAEILKRHGHVDVLINIAGVSYRGNILDTHVSVQREVMETNYFGPVALTQAILPSMVDRGSGHIVVISSVQGKISIPYRSAYAAS 195          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: Y2567_STAAR (Uncharacterized oxidoreductase SAR2567 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2567 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = 3
Query:  159 IEDKVVWITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTALEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSAS 641
            + DK+  +TGA  GIGE IA  L   GAK++L+ RN  +L+ V  QL    A   VK++P D+   E+ +   ++ A+  F   G+D +I N+A +   S   +   +   + I+VN+ GT+   +   P ML +  GH + ++S +G        +YSA+
Sbjct:    4 LTDKIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQL----AQDSVKVVPTDVTKKEE-VDELIKMAQQTF--GGLDIVI-NSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAKAALPTMLEQSSGHLINIASISGFEVTKSSTIYSAT 156          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: MKAR_COCIM (3-ketoacyl-CoA reductase OS=Coccidioides immitis GN=CIMG_08188 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  180 ITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTA-LEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVYSAS 641
            +TGAS GIG+  A Q+AR G  +IL +R+A++L  V  ++   +     K + +D +   D      EK +       +  +I+N           ++  E+ +K  I +N LGT+ +T+L+AP M++R +G  + M S  G  P P  A YS S
Sbjct:   75 VTGASDGIGKEYALQIARKGYNIILVSRSASKLSAVASEITSANPNILTKTVSMDFSENNDE---DYEKLKDIIKDLDISILINNVGLSHSIPVPFVQTPEKEMKDIIAINCLGTLRVTQLVAPGMMQRKRGLILTMGSFGGLLPTPLLATYSGS 226          
BLAST of FC931994 vs. ExPASy Swiss-Prot
Match: Y1627_STAS1 (Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 55/158 (34.81%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  159 IEDKVVWITGASRGIGEVIAKQLARLGAKLILSARNAAELERVREQLVGKHAPAEVKILPLDLASGEDSLRVAVEKAESFFPGAGVDYMIHNAAYERPKSTALEVSEESLKATINVNVLGTISLTRLLAPFMLRRGKGHFVVMSSAAGKTPAPGQAVY 632
            ++DKVV ITGAS GIGE     L+  GAKL+L AR    LE++ +Q VG  +   V I   D+    D +   +E A + F    +D +I+NA    P+S   +  ++     I+VN+ G +     + P+M ++  GH + ++S AG    PG AVY
Sbjct:    4 VKDKVVVITGASSGIGEETVNLLSENGAKLVLGARRLDRLEKI-QQKVGHDS---VSIKKTDVTK-PDEVNALIETAYNDF--GRIDVLINNAGL-MPQSFLEKNKQDEWNQMIDVNIKGVLYGIGAVLPYMRKQKSGHIINLASVAGHVVFPGSAVY 153          
The following BLAST results are available for this feature:
BLAST of FC931994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
DHRS4_BOVIN7.075e-1529.82Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
MKAR_CHAGB1.207e-1430.973-ketoacyl-CoA reductase OS=Chaetomium globosum GN... [more]
DHRS4_PONAB1.207e-1426.97Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN1.207e-1426.97Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
MKAR_ASPNC1.576e-1430.323-ketoacyl-CoA reductase OS=Aspergillus niger (str... [more]
DRS7B_MOUSE1.576e-1432.54Dehydrogenase/reductase SDR family member 7B OS=Mu... [more]
DRS7B_DANRE1.576e-1430.91Dehydrogenase/reductase SDR family member 7B OS=Da... [more]
Y2567_STAAR2.058e-1431.68Uncharacterized oxidoreductase SAR2567 OS=Staphylo... [more]
MKAR_COCIM2.058e-1430.973-ketoacyl-CoA reductase OS=Coccidioides immitis G... [more]
Y1627_STAS12.688e-1434.81Uncharacterized oxidoreductase SSP1627 OS=Staphylo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203E03EF PostHarveN Citrus clementina cDNA clone C34203E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931994 ID=FC931994; Name=FC931994; organism=Citrus clementina; type=EST; length=688bp
GGTGTCTAACGACCCAACTGAAATTTCGTTAAGAAAAAATGCAAACTTTG
CTCTTCATTTTTCTACTTCTCCTTCTTCCCTTATTTATCCTCTTCAAATT
CGTCACTGCTGAAGGTGACTTCACGTTAATGTCAAAGAAGCATGTAAAGA
AAGAAGAAATAGAAGATAAGGTAGTTTGGATTACTGGGGCTAGCCGTGGA
ATCGGTGAGGTTATCGCTAAACAATTGGCAAGGCTAGGTGCGAAACTCAT
TCTTTCAGCACGAAATGCAGCTGAATTGGAGCGAGTTAGGGAGCAGCTGG
TAGGTAAGCACGCACCTGCTGAAGTGAAGATTTTACCTTTGGATTTGGCA
TCCGGTGAGGATTCACTTAGGGTGGCTGTAGAAAAAGCAGAATCCTTTTT
CCCAGGTGCCGGTGTTGATTATATGATCCACAATGCAGCTTATGAGCGCC
CCAAATCAACAGCTTTAGAAGTCTCGGAGGAAAGCCTCAAGGCTACAATC
AATGTCAATGTTCTGGGGACAATATCTCTTACACGGCTATTGGCACCCTT
CATGCTGAGGCGGGGAAAGGGTCATTTTGTTGTGATGAGCAGTGCTGCGG
GGAAGACACCTGCACCTGGTCAGGCTGTATACTCTGCTTCTAATACGCTC
TGAATGGGTACTTTCACACATTGCGTTCTGAGCTCTGT
back to top