FC932002

Overview
NameFC932002
Unique NameFC932002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: YRBF_ECOL6 (Uncharacterized ABC transporter ATP-binding protein yrbF OS=Escherichia coli O6 GN=yrbF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.273e-15
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASGSLEG 595
            ++G    +PSELSGGM +R ALAR+I       ++EP+++++DEP  G DPI   V+  LI  +         N     + VVV+H    +    D    L + KIV  G      ++ +P   QF  G  +G
Sbjct:  134 LRGAAKLMPSELSGGMARRAALARAI-------ALEPDLIMFDEPFVGQDPITMGVLVKLISEL---------NSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRVRQFLDGIADG 250          

HSP 2 Score: 35.8094 bits (81), Expect = 1.273e-15
Identity = 18/50 (36.00%), Postives = 30/50 (60.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            R+ ++FQS ALF  + V +NV + L E++++    +   V   L AVGL+
Sbjct:   86 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR 135          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: YRBF_ECO57 (Uncharacterized ABC transporter ATP-binding protein yrbF OS=Escherichia coli O157:H7 GN=yrbF PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.273e-15
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASGSLEG 595
            ++G    +PSELSGGM +R ALAR+I       ++EP+++++DEP  G DPI   V+  LI  +         N     + VVV+H    +    D    L + KIV  G      ++ +P   QF  G  +G
Sbjct:  134 LRGAAKLMPSELSGGMARRAALARAI-------ALEPDLIMFDEPFVGQDPITMGVLVKLISEL---------NSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRVRQFLDGIADG 250          

HSP 2 Score: 35.8094 bits (81), Expect = 1.273e-15
Identity = 18/50 (36.00%), Postives = 30/50 (60.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            R+ ++FQS ALF  + V +NV + L E++++    +   V   L AVGL+
Sbjct:   86 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR 135          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: GLUA_CORGL (Glutamate transport ATP-binding protein gluA OS=Corynebacterium glutamicum GN=gluA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.278e-15
Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  212 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 517
            D+ P++LSGG ++RVA+AR++       ++ P+++L+DEPT+ LDP     V D++ S+ K+G           + V VTH+    R+A DR++F+ +G IV
Sbjct:  131 DKYPAQLSGGQQQRVAIARAL-------AMNPKIMLFDEPTSALDPEMVNEVLDVMASLAKEG----------MTMVCVTHEMGFARKAADRVLFMADGLIV 215          

HSP 2 Score: 34.2686 bits (77), Expect = 1.278e-15
Identity = 17/48 (35.42%), Postives = 27/48 (56.25%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +G+VFQS  LF  LT+++NV     +  KM+  +  +L    L  VG+
Sbjct:   79 VGMVFQSFNLFPHLTIKDNVTLAPIKVRKMKKSEAEKLAMSLLERVGI 126          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_LACGA (Methionine import ATP-binding protein metN OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=metN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.605e-15
Identity = 40/130 (30.77%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  212 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSLEGQ 598
            D  P++LSGG ++RVA+AR++  D       P++L+ DE T+ LDP  +  + DL+  ++KK   GL       + V++TH+   ++R  +++  + +GK++ +G   E F         QF  G+L+ Q
Sbjct:  139 DFYPAQLSGGQRQRVAIARALAND-------PDILISDEATSALDPKTTNQILDLLYDLNKK--LGL-------TIVLITHEMDAVKRVANKIAVMEKGKVIEKGDLREVFLHPQKQLTRQFVGGALQAQ 252          

HSP 2 Score: 34.2686 bits (77), Expect = 3.605e-15
Identity = 19/50 (38.00%), Postives = 31/50 (62.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +IG++FQ+  L +  TV ENV F L +++ + D+++ E     L  VGLK
Sbjct:   87 KIGMIFQNFNLLNEETVIENVAFAL-QHTHLSDKELEEKSLHLLELVGLK 135          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: TCYN_BACSU (L-cystine import ATP-binding protein tcyN OS=Bacillus subtilis GN=tcyN PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.726e-15
Identity = 45/115 (39.13%), Postives = 68/115 (59.13%), Query Frame = 2
Query:  203 GVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 538
            G++D+L   PS+LSGG K+RV +AR++       ++ P+VLL+DEPTA LDP     V +++  + K G          A+ +VVTH+    RR  D+++F+ EG IV QG   E
Sbjct:  128 GLQDKLNAYPSQLSGGQKQRVGIARAL-------AIHPDVLLFDEPTAALDPELVGEVLEVMLEIVKTG----------ATMIVVTHEMEFARRVSDQVVFMDEGVIVEQGTPEE 225          

HSP 2 Score: 26.1794 bits (56), Expect = 4.726e-15
Identity = 18/47 (38.30%), Postives = 23/47 (48.94%), Query Frame = 3
Query:   39 LVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +VFQ   LF   TV ENV   L    KMR +    + +  L  VGL+
Sbjct:   84 MVFQQYHLFAHKTVIENVMEGLTIARKMRKQDAYAVAENELRKVGLQ 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: GLNQ_BACSU (Glutamine transport ATP-binding protein glnQ OS=Bacillus subtilis GN=glnQ PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.156e-15
Identity = 41/110 (37.27%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  212 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEF 541
            D  PS+LSGG ++RVA+AR +       +++PEV+L+DEPT+ LDP     V D+++++ K+G           + VVVTH+    +   DR++F+ EGKI+ + +  EF
Sbjct:  131 DAYPSQLSGGQQQRVAIARGL-------AMKPEVMLFDEPTSALDPEMIGEVLDVMKTLAKEG----------MTMVVVTHEMGFAKEVADRIVFIDEGKILEEAVPAEF 223          

HSP 2 Score: 26.1794 bits (56), Expect = 6.156e-15
Identity = 15/48 (31.25%), Postives = 23/48 (47.92%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG+VFQ   L+   TV +N+     +  +   EQ  E  +  L  VG+
Sbjct:   79 IGMVFQHFHLYPHKTVLQNIMLAPVKVLRQSPEQAKETARYYLEKVGI 126          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: CBIO_METJA (Putative cobalt import ATP-binding protein cbiO OS=Methanocaldococcus jannaschii GN=cbiO PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.949e-14
Identity = 39/117 (33.33%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 547
            ++G E++ P  LSGG KKRVA+A  +       +++PEV++ DEPTAGLDP+ ++ +  L+  ++KKG           + ++ TH    +    D++  +Y+GKI+ +G   E  S
Sbjct:  129 MEGFENKPPHHLSGGQKKRVAIAGIL-------AMQPEVIVLDEPTAGLDPVGASKIMKLLYDLNKKG----------MTIIISTHDVDLVPVYADKVYVMYDGKILKEGTPKEVFS 228          

HSP 2 Score: 26.5646 bits (57), Expect = 2.949e-14
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 3
Query:   33 IGLVFQSA--ALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +GLVFQ+    +F + TV+E+V F    N  +  E++ + VKE L AVG++
Sbjct:   82 VGLVFQNPDDQIF-APTVKEDVAFGPL-NLGLPKEEVEKRVKEALKAVGME 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: THIQ_SILST (Thiamine import ATP-binding protein thiQ OS=Silicibacter sp. (strain TM1040) GN=thiQ PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.969e-14
Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 2
Query:  203 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNP 559
            G+E+R P+ELSGG + R ALAR ++          ++LL DEP A L P     + DL++ +    ENG+       + ++V+H     RR  D++I + EG++     TH    +  P
Sbjct:  121 GLEERKPAELSGGQQSRAALARVLV-------QRRDILLLDEPFAALGPALKAEMLDLVKEI--TSENGV-------TLLMVSHDPDDARRIADQVILIAEGQLYPPAPTHALLDNPPP 223          

HSP 2 Score: 36.5798 bits (83), Expect = 2.969e-14
Identity = 19/48 (39.58%), Postives = 30/48 (62.50%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            + ++FQ   LF  LTVR+N G  +  N K+R ++  + V+E +A VGL
Sbjct:   73 VAMLFQDGNLFPHLTVRQNAGLGIDPNRKLRPKE-RQTVEEAIARVGL 119          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: PSTB_AERPE (Phosphate import ATP-binding protein pstB OS=Aeropyrum pernix GN=pstB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.994e-14
Identity = 43/126 (34.13%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  170 WIKDLTEPWIQGVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 538
            W   +   W + V+DRL   P +LSGG ++R++LAR++       +++P VLL DEPTA +DP+++  +E  I    K+          +A+ ++VTH      R  D+++FLYEG+++  G T E
Sbjct:  127 WALKMAHLWDE-VKDRLSDYPHQLSGGQRQRLSLARAL-------ALKPRVLLLDEPTANIDPVSTVKIEQSIVEYAKE---------EMATVIIVTHTPQQAARISDQILFLYEGRVIEYGPTKE 235          

HSP 2 Score: 22.7126 bits (47), Expect = 4.994e-14
Identity = 15/44 (34.09%), Postives = 21/44 (47.73%), Query Frame = 3
Query:   36 GLVFQSAALFDSLTVRENVGF-----LLYENSKMRDEQISELVK 152
            G+VFQ    F  +T+ ENV        L +N K  DE +   +K
Sbjct:   87 GMVFQEPNPFPHMTIYENVAIGPKLHGLAKNKKELDEIVEWALK 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: ARTP_HAEIN (Arginine transport ATP-binding protein artP OS=Haemophilus influenzae GN=artP PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.002e-14
Identity = 42/126 (33.33%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQF 574
            ++ + DR P  LSGG ++RVA+AR+++       ++P+VLL+DEPTA LDP  +  V D+I+ + + G           + V+VTH+ +  ++   +++++ +GKIV  G    F    NP   QF
Sbjct:  132 LEQLADRFPLHLSGGQQQRVAIARALM-------MKPQVLLFDEPTAALDPEITAQVVDIIKELQETG----------ITQVIVTHEVNVAQKVATKVVYMEQGKIVEMGSADCF---ENPKTEQF 237          

HSP 2 Score: 22.7126 bits (47), Expect = 5.002e-14
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENV 92
            +G+VFQ   L+  LTV EN+
Sbjct:   85 VGMVFQQYHLWPHLTVIENL 104          
The following BLAST results are available for this feature:
BLAST of FC932002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
YRBF_ECOL61.273e-1532.33Uncharacterized ABC transporter ATP-binding protei... [more]
YRBF_ECO571.273e-1532.33Uncharacterized ABC transporter ATP-binding protei... [more]
GLUA_CORGL1.278e-1536.27Glutamate transport ATP-binding protein gluA OS=Co... [more]
METN_LACGA3.605e-1530.77Methionine import ATP-binding protein metN OS=Lact... [more]
TCYN_BACSU4.726e-1539.13L-cystine import ATP-binding protein tcyN OS=Bacil... [more]
GLNQ_BACSU6.156e-1537.27Glutamine transport ATP-binding protein glnQ OS=Ba... [more]
CBIO_METJA2.949e-1433.33Putative cobalt import ATP-binding protein cbiO OS... [more]
THIQ_SILST2.969e-1431.93Thiamine import ATP-binding protein thiQ OS=Silici... [more]
PSTB_AERPE4.994e-1434.13Phosphate import ATP-binding protein pstB OS=Aerop... [more]
ARTP_HAEIN5.002e-1433.33Arginine transport ATP-binding protein artP OS=Hae... [more]

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Properties
Property NameValue
Genbank descriptionC34203F01EF PostHarveN Citrus clementina cDNA clone C34203F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932002 ID=FC932002; Name=FC932002; organism=Citrus clementina; type=EST; length=600bp
TGATGGCATTATGAGAAAGTAGTGTGCTTCGGATTGGATTGGTTTTCCAA
AGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAAAATGTTGGTTTCCT
TCTGTATGAAAATTCGAAGATGCGTGATGAACAAATTTCAGAGCTTGTGA
AGGAAAATTTGGCTGCTGTTGGATTAAAGATCTGACTGAGCCTTGGATCC
AGGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAA
AGAGTTGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCGGT
GGAGCCAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCA
TTGCATCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGT
GAAAATGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTAC
TCACCAACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCT
ACGAGGGTAAGATTGTTTGGCAAGGAATGACCCATGAATTCACATCATCA
TCCAATCCAANTTGTTCACAGTTTGCATCAGGGAGCTTGGAAGGCCAATC
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