FC932002

Overview
NameFC932002
Unique NameFC932002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN2_YERPS (Methionine import ATP-binding protein metN 2 OS=Yersinia pseudotuberculosis GN=metN2 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.214e-12
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            +D  P+ LSGG K+RVA+AR++       +  P+VLL DE T+ LDP  +  + +L++ ++++   GL       + +++TH+   ++R  D++  + EGK++ +    E F+    P   QF   +L
Sbjct:  134 QDAYPANLSGGQKQRVAIARAL-------ASNPKVLLCDEATSALDPATTRSILELLKDINRR--LGL-------TILLITHEMDVVKRICDQVAVISEGKLIEKDSVSEVFSHPKTPLAQQFIQSTL 245          

HSP 2 Score: 25.7942 bits (55), Expect = 4.214e-12
Identity = 18/49 (36.73%), Postives = 26/49 (53.06%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +IG++FQ   L  S TV  N+   L  ++  R + I + V E L  VGL
Sbjct:   83 QIGMIFQHFNLLSSRTVYGNIALPLELDNTSRAD-IKKRVNELLDLVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN2_YERPN (Methionine import ATP-binding protein metN 2 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=metN2 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.214e-12
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            +D  P+ LSGG K+RVA+AR++       +  P+VLL DE T+ LDP  +  + +L++ ++++   GL       + +++TH+   ++R  D++  + EGK++ +    E F+    P   QF   +L
Sbjct:  134 QDAYPANLSGGQKQRVAIARAL-------ASNPKVLLCDEATSALDPATTRSILELLKDINRR--LGL-------TILLITHEMDVVKRICDQVAVISEGKLIEKDSVSEVFSHPKTPLAQQFIQSTL 245          

HSP 2 Score: 25.7942 bits (55), Expect = 4.214e-12
Identity = 18/49 (36.73%), Postives = 26/49 (53.06%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +IG++FQ   L  S TV  N+   L  ++  R + I + V E L  VGL
Sbjct:   83 QIGMIFQHFNLLSSRTVYGNIALPLELDNTSRAD-IKKRVNELLDLVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN1_YERPE (Methionine import ATP-binding protein metN 1 OS=Yersinia pestis GN=metN1 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.214e-12
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            +D  P+ LSGG K+RVA+AR++       +  P+VLL DE T+ LDP  +  + +L++ ++++   GL       + +++TH+   ++R  D++  + EGK++ +    E F+    P   QF   +L
Sbjct:  134 QDAYPANLSGGQKQRVAIARAL-------ASNPKVLLCDEATSALDPATTRSILELLKDINRR--LGL-------TILLITHEMDVVKRICDQVAVISEGKLIEKDSVSEVFSHPKTPLAQQFIQSTL 245          

HSP 2 Score: 25.7942 bits (55), Expect = 4.214e-12
Identity = 18/49 (36.73%), Postives = 26/49 (53.06%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +IG++FQ   L  S TV  N+   L  ++  R + I + V E L  VGL
Sbjct:   83 QIGMIFQHFNLLSSRTVYGNIALPLELDNTSRAD-IKKRVNELLDLVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN1_YERPA (Methionine import ATP-binding protein metN 1 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=metN1 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.214e-12
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            +D  P+ LSGG K+RVA+AR++       +  P+VLL DE T+ LDP  +  + +L++ ++++   GL       + +++TH+   ++R  D++  + EGK++ +    E F+    P   QF   +L
Sbjct:  134 QDAYPANLSGGQKQRVAIARAL-------ASNPKVLLCDEATSALDPATTRSILELLKDINRR--LGL-------TILLITHEMDVVKRICDQVAVISEGKLIEKDSVSEVFSHPKTPLAQQFIQSTL 245          

HSP 2 Score: 25.7942 bits (55), Expect = 4.214e-12
Identity = 18/49 (36.73%), Postives = 26/49 (53.06%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +IG++FQ   L  S TV  N+   L  ++  R + I + V E L  VGL
Sbjct:   83 QIGMIFQHFNLLSSRTVYGNIALPLELDNTSRAD-IKKRVNELLDLVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN2_RHOSR (Methionine import ATP-binding protein metN 2 OS=Rhodococcus sp. (strain RHA1) GN=metN2 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.215e-12
Identity = 42/127 (33.07%), Postives = 66/127 (51.97%), Query Frame = 2
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSLEGQ 598
            P +LSGG K+RV +AR++       +  P++LL DE T+ LDP  +  V  L+R V++  E G+       + VV+TH+   +R   DR+  L EG++V  G   + F+    P    F S  L  +
Sbjct:  141 PDQLSGGQKQRVGIARAL-------ATSPDLLLADESTSALDPETTQDVLRLLRKVNR--ELGV-------TIVVITHEMDVVRAVADRVAVLAEGRVVELGTVFDVFSEPQAPASKSFVSTILRNR 251          

HSP 2 Score: 28.1054 bits (61), Expect = 4.215e-12
Identity = 20/49 (40.82%), Postives = 26/49 (53.06%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +IG++FQ   LF S TV  NV + L      R ++  E V E L  VGL
Sbjct:   86 KIGMIFQQFNLFRSRTVAGNVAYPLVVAGWPRQKR-RERVAELLEFVGL 133          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN1_OCEIH (Methionine import ATP-binding protein metN 1 OS=Oceanobacillus iheyensis GN=metN1 PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 4.216e-12
Identity = 37/121 (30.58%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  203 GVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 556
            G+ED+    PS+LSGG K+RV++AR++       +  P+VLL DE T+ LDP  +  +  L++ +++  + G+       + V++TH+   ++   DR   +  GK++  G T++  S  N
Sbjct:  129 GIEDKANQYPSQLSGGQKQRVSIARAL-------ANNPKVLLCDEATSALDPSTTKSILKLLKKINE--QIGI-------TIVIITHEMEVVKEICDRCAVMQNGKVIENGKTYDIFSDPN 233          

HSP 2 Score: 26.5646 bits (57), Expect = 4.216e-12
Identity = 13/24 (54.17%), Postives = 15/24 (62.50%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLL 104
            IG++FQ   L  S TV ENV F L
Sbjct:   84 IGMIFQGFYLVSSKTVVENVSFAL 107          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_BACHD (Methionine import ATP-binding protein metN OS=Bacillus halodurans GN=metN PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.216e-12
Identity = 38/110 (34.55%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            ++G E+  PS+LSGG K+RV +AR++       +  P+VLL DE T+ LDP  +  + DL+  +++K   GL       + V++TH+   IR+   R+  +  GK+V +G
Sbjct:  130 LEGREEAYPSQLSGGQKQRVGIARAL-------ANNPKVLLCDEATSALDPKTTDSILDLLVDINEK--LGL-------TIVLITHEMHVIRKICHRVAVMEAGKVVEEG 223          

HSP 2 Score: 28.8758 bits (63), Expect = 4.216e-12
Identity = 16/43 (37.21%), Postives = 26/43 (60.47%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLY---ENSKMRDEQISELV 149
            +IG++FQ   L  S TVR+N+ F L       K R++++ EL+
Sbjct:   83 KIGMIFQHFNLLWSRTVRKNIAFPLEIAGVPKKEREKRVDELI 125          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_SYMTH (Methionine import ATP-binding protein metN OS=Symbiobacterium thermophilum GN=metN PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.219e-12
Identity = 35/102 (34.31%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            P++LSGG K+RV +AR++       +  P++LL DE T+ LDP  +  V  L+R ++++   GL       + +++THQ   +++  D +  L EGK+V QG
Sbjct:  138 PNQLSGGQKQRVGIARAL-------APGPKLLLSDEATSALDPDTTRSVLALLREINRR--LGL-------TILLITHQMEVVKQVCDSVAILEEGKVVEQG 223          

HSP 2 Score: 32.7278 bits (73), Expect = 4.219e-12
Identity = 22/48 (45.83%), Postives = 29/48 (60.42%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +G++FQ   LFDS TV  NV + L E +     +I E V+E LA VGL
Sbjct:   84 MGMIFQQFNLFDSRTVFGNVAYPL-EVAGWPRARIRERVEELLALVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: PSTB_PYRKO (Phosphate import ATP-binding protein pstB OS=Pyrococcus kodakaraensis GN=pstB PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.258e-12
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 2
Query:  206 VEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            V+DRL   P  LSGG ++R+ +AR++       +++PEVLL DEPTA +DP+ +  +E+L+  + +             + V+VTH  +   R  D + FLY G+++  G   + F +  +    ++ +G+L
Sbjct:  139 VKDRLNDYPGNLSGGQRQRLVIARAL-------AMKPEVLLMDEPTANIDPVGTAKIEELLLELKED-----------YTIVLVTHSPAQAARVADYVAFLYLGELIEVGPARKVFENPEHELTEKYVTGAL 252          

HSP 2 Score: 25.409 bits (54), Expect = 4.258e-12
Identity = 16/50 (32.00%), Postives = 26/50 (52.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRD-EQISELVKENLAAVGL 176
            ++G+VFQ    F  LT+ +NV   L  N  ++  E++ E V+  L    L
Sbjct:   86 KVGMVFQYPNPFPHLTIYDNVAIGLKLNGLVKSREELDERVEWALKKAAL 135          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: PSTB2_PHOPR (Phosphate import ATP-binding protein pstB 2 OS=Photobacterium profundum GN=pstB2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  206 VEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 550
            V+DRL S    LSGG ++R+ +AR+I       ++EPEV+L DEPT+ LDPIA+  +EDL+ S+ K             + V+VTH     RR  DR  F   G++V    TH   S+
Sbjct:  140 VKDRLKSHAFSLSGGQQQRLCIARTI-------AMEPEVILMDEPTSALDPIATKKIEDLMESLKKD-----------FTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTHALFSN 239          
The following BLAST results are available for this feature:
BLAST of FC932002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
METN2_YERPS4.214e-1229.69Methionine import ATP-binding protein metN 2 OS=Ye... [more]
METN2_YERPN4.214e-1229.69Methionine import ATP-binding protein metN 2 OS=Ye... [more]
METN1_YERPE4.214e-1229.69Methionine import ATP-binding protein metN 1 OS=Ye... [more]
METN1_YERPA4.214e-1229.69Methionine import ATP-binding protein metN 1 OS=Ye... [more]
METN2_RHOSR4.215e-1233.07Methionine import ATP-binding protein metN 2 OS=Rh... [more]
METN1_OCEIH4.216e-1230.58Methionine import ATP-binding protein metN 1 OS=Oc... [more]
METN_BACHD4.216e-1234.55Methionine import ATP-binding protein metN OS=Baci... [more]
METN_SYMTH4.219e-1234.31Methionine import ATP-binding protein metN OS=Symb... [more]
PSTB_PYRKO4.258e-1230.30Phosphate import ATP-binding protein pstB OS=Pyroc... [more]
PSTB2_PHOPR4.325e-1238.98Phosphate import ATP-binding protein pstB 2 OS=Pho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203F01EF PostHarveN Citrus clementina cDNA clone C34203F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932002 ID=FC932002; Name=FC932002; organism=Citrus clementina; type=EST; length=600bp
TGATGGCATTATGAGAAAGTAGTGTGCTTCGGATTGGATTGGTTTTCCAA
AGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAAAATGTTGGTTTCCT
TCTGTATGAAAATTCGAAGATGCGTGATGAACAAATTTCAGAGCTTGTGA
AGGAAAATTTGGCTGCTGTTGGATTAAAGATCTGACTGAGCCTTGGATCC
AGGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAA
AGAGTTGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCGGT
GGAGCCAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCA
TTGCATCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGT
GAAAATGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTAC
TCACCAACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCT
ACGAGGGTAAGATTGTTTGGCAAGGAATGACCCATGAATTCACATCATCA
TCCAATCCAANTTGTTCACAGTTTGCATCAGGGAGCTTGGAAGGCCAATC
back to top