FC932002

Overview
NameFC932002
Unique NameFC932002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN2_STAES (Methionine import ATP-binding protein metN 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=metN2 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.555e-11
Identity = 32/113 (28.32%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 547
            +D+ P ELSGG K+RVA+AR+++         P++LL DE T+ LDP  ++ + +L+ +V++             + +++TH+ S I++   R+  +  G+++  G   +  S
Sbjct:  134 KDQFPDELSGGQKQRVAIARALV-------THPKILLCDEATSALDPATTSSILNLLSNVNRTFG---------VTIMMITHEMSVIQKICHRVAVMENGEVIEMGTVKDVFS 230          

HSP 2 Score: 29.6462 bits (65), Expect = 1.555e-11
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG++FQ   L +S +V +NV   L   SK   ++I E V E L  VGL
Sbjct:   84 IGMIFQHFNLLNSKSVYKNVAMPLI-LSKTNKKEIKEKVDEMLEFVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN1_STAEQ (Methionine import ATP-binding protein metN 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=metN1 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.555e-11
Identity = 32/113 (28.32%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 547
            +D+ P ELSGG K+RVA+AR+++         P++LL DE T+ LDP  ++ + +L+ +V++             + +++TH+ S I++   R+  +  G+++  G   +  S
Sbjct:  134 KDQFPDELSGGQKQRVAIARALV-------THPKILLCDEATSALDPATTSSILNLLSNVNRTFG---------VTIMMITHEMSVIQKICHRVAVMENGEVIEMGTVKDVFS 230          

HSP 2 Score: 29.6462 bits (65), Expect = 1.555e-11
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG++FQ   L +S +V +NV   L   SK   ++I E V E L  VGL
Sbjct:   84 IGMIFQHFNLLNSKSVYKNVAMPLI-LSKTNKKEIKEKVDEMLEFVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN1_LISIN (Methionine import ATP-binding protein metN 1 OS=Listeria innocua GN=metN1 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.556e-11
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  197 IQGVEDR---LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQF 574
            I G+ED+    PS+LSGG K+RVA+AR++       + EPE+LL DE T+ LDP  +  +  L+  ++   E G+       +  ++TH+   I+R  DR+  +  G +V QG   + FT + +    +F
Sbjct:  127 IVGLEDKRNNYPSQLSGGQKQRVAIARAL-------AHEPEILLSDEATSALDPETTEAILQLLLKIN--AELGI-------TIFLITHELDVIQRICDRVAVMENGHLVEQGTVLDIFTKAKHATTKRF 240          

HSP 2 Score: 26.1794 bits (56), Expect = 1.556e-11
Identity = 17/50 (34.00%), Postives = 27/50 (54.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +IG++FQ   L  + TV +N+   L      +DE I   V + L+ VGL+
Sbjct:   83 KIGMIFQGYNLLKTATVYDNIAKPLKLEGVPKDE-IEIRVNKYLSIVGLE 131          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN2_PSESM (Methionine import ATP-binding protein metN 2 OS=Pseudomonas syringae pv. tomato GN=metN2 PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.556e-11
Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 2
Query:  215 RLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            + P++LSGG K+RV +AR++       + +P++LL DE T+ LDP  +  V  L+  ++++ +          + V++TH+   IRR  D++  +  G IV QG
Sbjct:  137 KYPAQLSGGQKQRVGIARAL-------ATKPKILLCDEATSALDPQTTASVLQLLAEINRELK---------LTIVLITHEMDVIRRVCDQVAVMDAGVIVEQG 224          

HSP 2 Score: 31.5722 bits (70), Expect = 1.556e-11
Identity = 19/49 (38.78%), Postives = 26/49 (53.06%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            ++G++FQ   L  S TV +NV   L     M  +QI + V E L  VGL
Sbjct:   83 QVGMIFQHFNLLASRTVADNVAMPLTLAGDMPRKQIDQRVAELLERVGL 131          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_MYCSS (Methionine import ATP-binding protein metN OS=Mycobacterium sp. (strain MCS) GN=metN PE=3 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.557e-11
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = 2
Query:  203 GVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            G+ DR    P++LSGG ++RV +AR++       ++ P VLL DE T+GLDP  +  +  L+   H + + GL       S +++TH+   +R   D +  + +G+IV  G
Sbjct:  125 GLRDRSGYHPAQLSGGQRQRVGIARAL-------ALGPSVLLSDEATSGLDPATTKSILALLS--HLREDFGL-------SIILITHEMEVVREIADSVARIDDGRIVESG 219          

HSP 2 Score: 33.4982 bits (75), Expect = 1.557e-11
Identity = 20/50 (40.00%), Postives = 29/50 (58.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +IG++FQ+A L    TV +NV   L E  +  D+ +S  V E L  VGL+
Sbjct:   79 KIGVIFQTAPLLRRRTVAQNVALPL-EYLRATDDSVSRRVTELLDRVGLR 127          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_MYXXD (Methionine import ATP-binding protein metN OS=Myxococcus xanthus (strain DK 1622) GN=metN PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.557e-11
Identity = 35/106 (33.02%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 538
            PS+LSGG K+RV +AR++       +  P VLL DE T+ LDP  +  V  L+R +++K            + +++THQ   ++   D +  L  G++V QG   E
Sbjct:  138 PSQLSGGQKQRVGIARAL-------APRPRVLLSDEATSALDPETTRSVLGLLRDINQKLG---------VTLLLITHQMDVVKAICDSVSVLERGRLVEQGKVTE 227          

HSP 2 Score: 32.3426 bits (72), Expect = 1.557e-11
Identity = 22/48 (45.83%), Postives = 28/48 (58.33%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG++FQ   LF S TV  NV + L E +    E I E V+E L+ VGL
Sbjct:   84 IGMIFQHFNLFGSKTVAANVAYPL-EVAGTPREAIRERVEELLSLVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: PSTB_DEIGD (Phosphate import ATP-binding protein pstB OS=Deinococcus geothermalis (strain DSM 11300) GN=pstB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.572e-11
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  206 VEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASG 583
            V+DRL +    LSGG ++R+ +AR++       +VEPE+LL DEPT+ LDP ++  +EDL+  + K           + + ++VTH      R  D   F   G++V  G T + FTS  +     + +G
Sbjct:  138 VKDRLKTPATGLSGGQQQRLCIARAL-------AVEPEILLMDEPTSALDPASTARIEDLMTDLKK-----------VTTIIIVTHNMHQAARVSDTTSFFLNGELVEHGPTEQLFTSPRDERTEAYVTG 249          

HSP 2 Score: 22.7126 bits (47), Expect = 1.572e-11
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENV 92
            R+G+VFQ    F +++V +NV
Sbjct:   86 RVGMVFQKPNPFPTMSVFDNV 106          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: POTA_MYCPN (Spermidine/putrescine import ATP-binding protein potA OS=Mycoplasma pneumoniae GN=potA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 39/110 (35.45%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            ++G ED+LP ELSGGMK+RVALARS++       +EP++LL DEP + LD      ++  ++ +H+  ++GL       ++++VTH         +R++ + EG I+  G
Sbjct:  338 LKGNEDKLPEELSGGMKQRVALARSLV-------IEPDILLLDEPLSALDAKVRKNLQKELQKIHQ--QSGL-------TFILVTHDQEEALVLSNRIVVMNEGNILQVG 431          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: POTA_LISMF (Spermidine/putrescine import ATP-binding protein potA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=potA PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 2.015e-11
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            ++G E R  SE+SGG ++RVA+AR+I+        EPEV+L DEP + LD    T ++  +R + K+   G+       +++ VTH         D +  L +G+I   G
Sbjct:  128 LKGYEKREISEMSGGQRQRVAIARAIV-------NEPEVILLDEPLSALDLKLRTEMQYELRDLQKR--LGI-------TFIFVTHDQEEALAMSDEIFVLNKGEIQQSG 221          

HSP 2 Score: 35.8094 bits (81), Expect = 2.015e-11
Identity = 23/49 (46.94%), Postives = 27/49 (55.10%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +  VFQ  ALF  L V ENV F L    K++ + I E VKE L  V LK
Sbjct:   82 VNTVFQDYALFPHLNVYENVAFGL-RIKKLKKDAIDEKVKEALRFVNLK 129          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: POTA_LACS1 (Spermidine/putrescine import ATP-binding protein potA OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=potA PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.015e-11
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            + G EDR  SE+SGG ++RVA+AR+I+ D       P+VLL DEP + LD      ++  +RS+ KK   G+       +++ +TH         D +  L  G IV  G
Sbjct:  126 LDGYEDRAISEMSGGQRQRVAIARAIVLD-------PKVLLLDEPLSALDQKLRAEMQYELRSLQKK--LGI-------TFIFITHDQEEALAMSDEIFVLNNGNIVQSG 219          

HSP 2 Score: 29.261 bits (64), Expect = 2.015e-11
Identity = 19/49 (38.78%), Postives = 27/49 (55.10%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            ++  VFQ  ALF  L V +N+ F L +  K+  ++I E V E L  V L
Sbjct:   79 QVNTVFQDYALFQHLNVYDNIAFGL-KIKKVPADKIKEKVTEALRMVRL 126          
The following BLAST results are available for this feature:
BLAST of FC932002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
METN2_STAES1.555e-1128.32Methionine import ATP-binding protein metN 2 OS=St... [more]
METN1_STAEQ1.555e-1128.32Methionine import ATP-binding protein metN 1 OS=St... [more]
METN1_LISIN1.556e-1133.08Methionine import ATP-binding protein metN 1 OS=Li... [more]
METN2_PSESM1.556e-1131.73Methionine import ATP-binding protein metN 2 OS=Ps... [more]
METN_MYCSS1.557e-1132.43Methionine import ATP-binding protein metN OS=Myco... [more]
METN_MYXXD1.557e-1133.02Methionine import ATP-binding protein metN OS=Myxo... [more]
PSTB_DEIGD1.572e-1132.31Phosphate import ATP-binding protein pstB OS=Deino... [more]
POTA_MYCPN1.644e-1135.45Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LISMF2.015e-1132.73Spermidine/putrescine import ATP-binding protein p... [more]
POTA_LACS12.015e-1134.55Spermidine/putrescine import ATP-binding protein p... [more]

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Properties
Property NameValue
Genbank descriptionC34203F01EF PostHarveN Citrus clementina cDNA clone C34203F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932002 ID=FC932002; Name=FC932002; organism=Citrus clementina; type=EST; length=600bp
TGATGGCATTATGAGAAAGTAGTGTGCTTCGGATTGGATTGGTTTTCCAA
AGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAAAATGTTGGTTTCCT
TCTGTATGAAAATTCGAAGATGCGTGATGAACAAATTTCAGAGCTTGTGA
AGGAAAATTTGGCTGCTGTTGGATTAAAGATCTGACTGAGCCTTGGATCC
AGGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAA
AGAGTTGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCGGT
GGAGCCAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCA
TTGCATCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGT
GAAAATGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTAC
TCACCAACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCT
ACGAGGGTAAGATTGTTTGGCAAGGAATGACCCATGAATTCACATCATCA
TCCAATCCAANTTGTTCACAGTTTGCATCAGGGAGCTTGGAAGGCCAATC
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