FC932002

Overview
NameFC932002
Unique NameFC932002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: PSTB_MYCMO (Phosphate import ATP-binding protein pstB OS=Mycoplasma mobile GN=pstB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 2
Query:  218 LPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 538
            L + LSGG ++R+ +AR+I       ++EP VLL DEPT+ LDPIA+  VE+LI  +  +            S V+VTH  S  +R  D  +F Y G+IV    T E
Sbjct:  174 LGTSLSGGQQQRLCIARAI-------AIEPHVLLMDEPTSALDPIATAKVEELILKLKDR-----------YSIVIVTHSMSQAQRISDDTLFFYAGEIVEANKTKE 262          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: PSTB_ANADE (Phosphate import ATP-binding protein pstB OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pstB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 47/130 (36.15%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  206 VEDRLPSE---LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASG 583
            V+DRL      LSGG ++R+ +AR++       +VEPEV+L DEP + LDPIA+  +EDLI   H K    +A         +VTH      R  D+  F Y G +V  G T + FT+ S      + +G
Sbjct:  148 VKDRLGESALGLSGGQQQRLCIARAL-------AVEPEVVLMDEPASALDPIATAKIEDLIH--HLKARYTIA---------IVTHNMQQAARVSDQTAFFYMGDLVEVGPTEQIFTNPSEQRTEDYVTG 259          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_STAS1 (Methionine import ATP-binding protein metN OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=metN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            ++G ED  PSELSGG K+RV +AR++       + EP VLL DE T+ LDP  +  + +L+  +  K E  L       + V++TH+   IRR  D +  +  GK++ QG
Sbjct:  130 LKGREDAYPSELSGGQKQRVGIARAL-------ANEPSVLLCDEATSALDPQTTDEILELLLKI--KEERNL-------TIVIITHEMHVIRRICDEVAVMENGKVIEQG 223          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: FBPC_FUSNN (Fe(3+) ions import ATP-binding protein fbpC OS=Fusobacterium nucleatum subsp. nucleatum GN=fbpC PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.717e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKI 514
            I   +DR+P  LSGG ++RVALAR+++       ++P+VLL DEP + LD  A   VE  +R+  K+ +N +       + V VTH         DR+  + +G+I
Sbjct:  124 IDEYKDRMPERLSGGQQQRVALARALV-------IKPDVLLMDEPLSNLD--AKLRVE--MRTAIKEIQNSIG-----ITTVYVTHDQEEAMAVSDRIAVMKDGEI 213          

HSP 2 Score: 32.7278 bits (73), Expect = 5.717e-11
Identity = 17/40 (42.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 152
            IG+VFQ+ A+F  LTV +NV F L      ++E   E+ K
Sbjct:   78 IGMVFQNYAIFPHLTVEQNVEFGLKNRKVSKEEMKIEIDK 117          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_STRA5 (Methionine import ATP-binding protein metN OS=Streptococcus agalactiae serotype V GN=metN PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.725e-11
Identity = 38/126 (30.16%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  203 GVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQ 571
            G+ DR    PS+LSGG K+RVA+AR++  D       P++L+ DE T+ LDP  +  +  L++ ++KK   GL       + V++TH+   ++   +R+  +  GK++ +G   +  S      +Q
Sbjct:  138 GLSDRAQNYPSQLSGGQKQRVAIARALAND-------PKILISDESTSALDPKTTKQILALLQDLNKK--LGL-------TIVLITHEMQIVKDIANRVAVMQNGKLIEEGSVLDIFSHPRESLTQ 247          

HSP 2 Score: 28.8758 bits (63), Expect = 5.725e-11
Identity = 18/48 (37.50%), Postives = 26/48 (54.17%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG++FQ   L   LT  +NV F L ++S +  E  +  V + L  VGL
Sbjct:   93 IGMIFQHFNLMSQLTAEQNVAFAL-KHSGLSKEAKAAKVAKLLELVGL 139          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_STRA3 (Methionine import ATP-binding protein metN OS=Streptococcus agalactiae serotype III GN=metN PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.725e-11
Identity = 38/126 (30.16%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  203 GVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQ 571
            G+ DR    PS+LSGG K+RVA+AR++  D       P++L+ DE T+ LDP  +  +  L++ ++KK   GL       + V++TH+   ++   +R+  +  GK++ +G   +  S      +Q
Sbjct:  138 GLSDRAQNYPSQLSGGQKQRVAIARALAND-------PKILISDESTSALDPKTTKQILALLQDLNKK--LGL-------TIVLITHEMQIVKDIANRVAVMQNGKLIEEGSVLDIFSHPRESLTQ 247          

HSP 2 Score: 28.8758 bits (63), Expect = 5.725e-11
Identity = 18/48 (37.50%), Postives = 26/48 (54.17%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG++FQ   L   LT  +NV F L ++S +  E  +  V + L  VGL
Sbjct:   93 IGMIFQHFNLMSQLTAEQNVAFAL-KHSGLSKEAKAAKVAKLLELVGL 139          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_STRA1 (Methionine import ATP-binding protein metN OS=Streptococcus agalactiae serotype Ia GN=metN PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.725e-11
Identity = 38/126 (30.16%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  203 GVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQ 571
            G+ DR    PS+LSGG K+RVA+AR++  D       P++L+ DE T+ LDP  +  +  L++ ++KK   GL       + V++TH+   ++   +R+  +  GK++ +G   +  S      +Q
Sbjct:  138 GLSDRAQNYPSQLSGGQKQRVAIARALAND-------PKILISDESTSALDPKTTKQILALLQDLNKK--LGL-------TIVLITHEMQIVKDIANRVAVMQNGKLIEEGSVLDIFSHPRESLTQ 247          

HSP 2 Score: 28.8758 bits (63), Expect = 5.725e-11
Identity = 18/48 (37.50%), Postives = 26/48 (54.17%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG++FQ   L   LT  +NV F L ++S +  E  +  V + L  VGL
Sbjct:   93 IGMIFQHFNLMSQLTAEQNVAFAL-KHSGLSKEAKAAKVAKLLELVGL 139          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_STRR6 (Methionine import ATP-binding protein metN OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=metN PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 5.727e-11
Identity = 39/130 (30.00%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  203 GVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFAS 580
            G+ DR    PS+LSGG K+RVA+AR++  D       P++L+ DE T+ LDP  +  +  L++ +++K   GL       + V++TH+   ++   +R+  + +G ++ +G   E F++   P    F S
Sbjct:  137 GLADRAENYPSQLSGGQKQRVAIARALAND-------PKILISDESTSALDPKTTKQILALLQDLNQK--LGL-------TVVLITHEMQIVKDIANRVAVMQDGHLIEEGSVLEIFSNPKQPLTQDFIS 250          

HSP 2 Score: 28.8758 bits (63), Expect = 5.727e-11
Identity = 13/40 (32.50%), Postives = 22/40 (55.00%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVK 152
            IG++FQ   L    T  ENV F L  +   ++E+ +++ K
Sbjct:   92 IGMIFQHFNLMSQKTAEENVAFALKHSGLSKEEKKAKVAK 131          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN1_BURCM (Methionine import ATP-binding protein metN 1 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=metN1 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 5.732e-11
Identity = 37/106 (34.91%), Postives = 65/106 (61.32%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            +DR P+++SGG K+RV +AR++       + +P+VLL DE T+ LDP  +  + DL++ +++  E GL       + V++THQ   I++  DR+  L  G++V +G
Sbjct:  134 KDRYPAQISGGQKQRVGIARAL-------ASKPKVLLSDEATSALDPETTRSILDLLKRINR--ELGL-------TIVLITHQMEVIKQVCDRVAVLDAGRVVEEG 223          

HSP 2 Score: 22.3274 bits (46), Expect = 5.732e-11
Identity = 11/24 (45.83%), Postives = 14/24 (58.33%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLL 104
            IG++FQ   L  S TV +NV   L
Sbjct:   84 IGMIFQHFNLLSSRTVFDNVALPL 107          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_BARHE (Methionine import ATP-binding protein metN OS=Bartonella henselae GN=metN PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 5.732e-11
Identity = 38/116 (32.76%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  203 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTS 547
            G E   P+ELSGG K+RV +ARS+       +  P++LL DE T+ LDP  +  + +L+  ++K+            + V++TH+   +R    R++ L +G+IV +G   + FTS
Sbjct:  136 GKEYCYPAELSGGQKQRVGIARSL-------AANPKILLSDEATSALDPETTQSILELLADINKRLN---------LTIVLITHEMEVVRAIAHRVVVLNQGRIVEEGRVKDIFTS 235          

HSP 2 Score: 24.6386 bits (52), Expect = 5.732e-11
Identity = 14/44 (31.82%), Postives = 22/44 (50.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGF---LLYENSKMRDEQISELVK 152
            RIG++FQ   L  S  +  N+     L   N K R ++  EL++
Sbjct:   87 RIGMIFQHFNLLSSQNILNNIALPLKLTGINKKQRHKRALELIE 130          
The following BLAST results are available for this feature:
BLAST of FC932002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
PSTB_MYCMO4.782e-1139.25Phosphate import ATP-binding protein pstB OS=Mycop... [more]
PSTB_ANADE4.782e-1136.15Phosphate import ATP-binding protein pstB OS=Anaer... [more]
METN_STAS14.782e-1137.27Methionine import ATP-binding protein metN OS=Stap... [more]
FBPC_FUSNN5.717e-1134.91Fe(3+) ions import ATP-binding protein fbpC OS=Fus... [more]
METN_STRA55.725e-1130.16Methionine import ATP-binding protein metN OS=Stre... [more]
METN_STRA35.725e-1130.16Methionine import ATP-binding protein metN OS=Stre... [more]
METN_STRA15.725e-1130.16Methionine import ATP-binding protein metN OS=Stre... [more]
METN_STRR65.727e-1130.00Methionine import ATP-binding protein metN OS=Stre... [more]
METN1_BURCM5.732e-1134.91Methionine import ATP-binding protein metN 1 OS=Bu... [more]
METN_BARHE5.732e-1132.76Methionine import ATP-binding protein metN OS=Bart... [more]

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Properties
Property NameValue
Genbank descriptionC34203F01EF PostHarveN Citrus clementina cDNA clone C34203F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932002 ID=FC932002; Name=FC932002; organism=Citrus clementina; type=EST; length=600bp
TGATGGCATTATGAGAAAGTAGTGTGCTTCGGATTGGATTGGTTTTCCAA
AGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAAAATGTTGGTTTCCT
TCTGTATGAAAATTCGAAGATGCGTGATGAACAAATTTCAGAGCTTGTGA
AGGAAAATTTGGCTGCTGTTGGATTAAAGATCTGACTGAGCCTTGGATCC
AGGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAA
AGAGTTGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCGGT
GGAGCCAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCA
TTGCATCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGT
GAAAATGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTAC
TCACCAACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCT
ACGAGGGTAAGATTGTTTGGCAAGGAATGACCCATGAATTCACATCATCA
TCCAATCCAANTTGTTCACAGTTTGCATCAGGGAGCTTGGAAGGCCAATC
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