FC932002

Overview
NameFC932002
Unique NameFC932002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: THIQ_ECOLI (Thiamine import ATP-binding protein thiQ OS=Escherichia coli (strain K12) GN=thiQ PE=1 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 9.802e-11
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 2 
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 547
            I  +  RLP ELSGG ++RVALAR ++        E  +LL DEP + LDP     +  L+ +  ++ +  L         ++V+H      R   R + + +G+I WQGMT+E  S
Sbjct:  119 IDNLMARLPGELSGGQRQRVALARCLV-------REQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTL---------LMVSHSVEDAARIATRSVVVADGRIAWQGMTNELLS 219

HSP 2 Score: 25.409 bits (54), Expect = 9.802e-11
Identity = 12/34 (35.29%), Postives = 18/34 (52.94%), Query Frame = 3 
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 134
            + ++FQ   LF  LTV +N+G  L    K+   Q
Sbjct:   73 VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQ 106
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: THIQ_ECO57 (Thiamine import ATP-binding protein thiQ OS=Escherichia coli O157:H7 GN=thiQ PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.802e-11
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 2 
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTS 547
            I  +  RLP ELSGG ++RVALAR ++        E  +LL DEP + LDP     +  L+ +  ++ +  L         ++V+H      R   R + + +G+I WQGMT+E  S
Sbjct:  119 IDNLMARLPGELSGGQRQRVALARCLV-------REQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTL---------LMVSHSVEDAARIATRSVVVADGRIAWQGMTNELLS 219

HSP 2 Score: 25.409 bits (54), Expect = 9.802e-11
Identity = 12/34 (35.29%), Postives = 18/34 (52.94%), Query Frame = 3 
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQ 134
            + ++FQ   LF  LTV +N+G  L    K+   Q
Sbjct:   73 VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQ 106
The following BLAST results are available for this feature:
BLAST of FC932002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
THIQ_ECOLI9.802e-1133.33Thiamine import ATP-binding protein thiQ OS=Escher... [more]
THIQ_ECO579.802e-1133.33Thiamine import ATP-binding protein thiQ OS=Escher... [more]

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Properties
Property NameValue
Genbank descriptionC34203F01EF PostHarveN Citrus clementina cDNA clone C34203F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932002 ID=FC932002; Name=FC932002; organism=Citrus clementina; type=EST; length=600bp
TGATGGCATTATGAGAAAGTAGTGTGCTTCGGATTGGATTGGTTTTCCAA
AGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAAAATGTTGGTTTCCT
TCTGTATGAAAATTCGAAGATGCGTGATGAACAAATTTCAGAGCTTGTGA
AGGAAAATTTGGCTGCTGTTGGATTAAAGATCTGACTGAGCCTTGGATCC
AGGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAA
AGAGTTGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCGGT
GGAGCCAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCA
TTGCATCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGT
GAAAATGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTAC
TCACCAACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCT
ACGAGGGTAAGATTGTTTGGCAAGGAATGACCCATGAATTCACATCATCA
TCCAATCCAANTTGTTCACAGTTTGCATCAGGGAGCTTGGAAGGCCAATC
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