FC932002

Overview
NameFC932002
Unique NameFC932002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: ARTM_BACSU (Arginine transport ATP-binding protein artM OS=Bacillus subtilis GN=artM PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.125e-13
Identity = 37/110 (33.64%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSS 550
            P+ LSGG K+RVA+AR++       ++ P+++L+DEPT+ LDP    +V+++++ + +  E G+       + V+VTH+    +   DR++F+ +G IV  G   EF  S
Sbjct:  134 PNRLSGGQKQRVAIARAL-------AMNPDIMLFDEPTSALDP---EMVKEVLQVMKELVETGM-------TMVIVTHEMGFAKEVADRVLFMDQGMIVEDGNPKEFFMS 226          

HSP 2 Score: 28.1054 bits (61), Expect = 3.125e-13
Identity = 17/48 (35.42%), Postives = 23/48 (47.92%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG+VFQ   LF   TV EN+ +      K   +   E  ++ L  VGL
Sbjct:   79 IGMVFQHFHLFPHKTVLENIMYAPVNVKKESKQAAQEKAEDLLRKVGL 126          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_LACAC (Methionine import ATP-binding protein metN OS=Lactobacillus acidophilus GN=metN PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.007e-13
Identity = 34/125 (27.20%), Postives = 67/125 (53.60%), Query Frame = 2
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSLE 592
            PSELSGG K+RVA+AR++       +  P++L+ DE T+ LDP  +  + DL++ ++K+            + +++TH+   +++   ++  +  G+++ +G   + F         +F  GSLE
Sbjct:  146 PSELSGGQKQRVAIARAL-------ANNPDILISDEATSALDPQNTQQILDLLKRLNKQFN---------LTVILITHEMDAVKKIATKVAVMEHGQVIEKGSLRQVFLHPKQELTKKFVGGSLE 254          

HSP 2 Score: 33.8834 bits (76), Expect = 4.007e-13
Identity = 19/49 (38.78%), Postives = 29/49 (59.18%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            IG++FQ   L +  TV ENV F L ++ K+ D+++ +   E L  V LK
Sbjct:   92 IGMIFQGFNLLNETTVLENVAFAL-KHEKLSDDELEKKSLELLELVDLK 139          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_RALSO (Methionine import ATP-binding protein metN OS=Ralstonia solanacearum GN=metN PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.008e-13
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            +DR P+++SGG K+RV +AR++       + +P+VLL DE T+ LDP  +  + DL+R +++  E GL       + V++THQ   I++  DR+  L  G++V  G
Sbjct:  135 KDRYPAQISGGQKQRVGIARAL-------ASQPDVLLSDEATSALDPETTRSILDLLRKINR--ELGL-------TIVLITHQMEVIKQVCDRVAVLDAGRVVELG 224          

HSP 2 Score: 28.8758 bits (63), Expect = 4.008e-13
Identity = 20/49 (40.82%), Postives = 27/49 (55.10%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +IG++FQ   L  S TV +NV   L E +    E+I E+V   L  VGL
Sbjct:   84 KIGMIFQHFNLLSSRTVYDNVALPL-ELAGTPRERIREIVLPLLELVGL 131          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: CYSA2_AGRT5 (Sulfate/thiosulfate import ATP-binding protein cysA 2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=cysA2 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.011e-13
Identity = 40/120 (33.33%), Postives = 59/120 (49.17%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSN 556
            + G+ DR P+++SGG ++RVALAR++       SV+P+VLL DEP   LD      +   +R +H     G+         + VTH         DR++ L +G IV QG   E     N
Sbjct:  124 LDGLGDRFPAQISGGQRQRVALARAL-------SVDPKVLLLDEPFGALDANVRRDLRRWLREIH--DSLGITT-------IFVTHDQEEALDLADRVVILNQGGIVQQGTPKEVCRQPN 227          

HSP 2 Score: 31.9574 bits (71), Expect = 4.011e-13
Identity = 20/49 (40.82%), Postives = 27/49 (55.10%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDE-QISELVKENLAAVGL 176
            +G VFQ  ALF  +T+ EN+ F +  +   RD+  I   VKE L  V L
Sbjct:   76 VGFVFQHYALFPHMTLHENIAFGMKVSKVKRDKAAIDARVKELLNLVKL 124          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: GLNQ_ECOLI (Glutamine transport ATP-binding protein glnQ OS=Escherichia coli (strain K12) GN=glnQ PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.060e-13
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG 526
            PSELSGG ++RVA+AR++       +V+P+++L+DEPT+ LDP    +  ++++ +    E G+       + V+VTH+     +   RLIF+ +G+I   G
Sbjct:  134 PSELSGGQQQRVAIARAL-------AVKPKMMLFDEPTSALDP---ELRHEVLKVMQDLAEEGM-------TMVIVTHEIGFAEKVASRLIFIDKGRIAEDG 218          

HSP 2 Score: 32.3426 bits (72), Expect = 4.060e-13
Identity = 20/47 (42.55%), Postives = 24/47 (51.06%), Query Frame = 3
Query:   36 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            G+VFQ   LF  LT  ENV F          E+  +L +E LA VGL
Sbjct:   80 GMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAEKLARELLAKVGL 126          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN1_PSEAE (Methionine import ATP-binding protein metN 1 OS=Pseudomonas aeruginosa GN=metN1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.198e-13
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 2
Query:  212 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASGSL 589
            D  P++LSGG K+RV +AR+++        +P++LL DE T+ LDP ++  +  L+R ++++   GL       + V++TH+ + IR   DR++ L  G+IV QG   E         ++   GSL
Sbjct:  159 DAYPAQLSGGQKQRVGIARALVH-------QPQILLCDEATSALDPESTQAILALLRDINRR--LGL-------TIVLITHEMAVIREICDRVVVLECGRIVEQGEVWEVFGDPRHAVTRSLLGSL 268          

HSP 2 Score: 27.7202 bits (60), Expect = 5.198e-13
Identity = 19/50 (38.00%), Postives = 26/50 (52.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            RIG++FQ   L  + TVR+N+   L      R  +I E V   L  VGL+
Sbjct:  107 RIGMIFQHFNLMSAKTVRQNIALPLRVAGVPR-ARIEERVAGLLQLVGLE 155          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN1_PSEAB (Methionine import ATP-binding protein metN 1 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metN1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.198e-13
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 2
Query:  212 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASGSL 589
            D  P++LSGG K+RV +AR+++        +P++LL DE T+ LDP ++  +  L+R ++++   GL       + V++TH+ + IR   DR++ L  G+IV QG   E         ++   GSL
Sbjct:  159 DAYPAQLSGGQKQRVGIARALVH-------QPQILLCDEATSALDPESTQAILALLRDINRR--LGL-------TIVLITHEMAVIREICDRVVVLECGRIVEQGEVWEVFGDPRHAVTRSLLGSL 268          

HSP 2 Score: 27.7202 bits (60), Expect = 5.198e-13
Identity = 19/50 (38.00%), Postives = 26/50 (52.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            RIG++FQ   L  + TVR+N+   L      R  +I E V   L  VGL+
Sbjct:  107 RIGMIFQHFNLMSAKTVRQNIALPLRVAGVPR-ARIEERVAGLLQLVGLE 155          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_HAEDU (Methionine import ATP-binding protein metN OS=Haemophilus ducreyi GN=metN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.209e-13
Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  209 EDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQF 574
            +D  PS LSGG K+RVA+AR++  D       P+VLL DE T+ LDP+ +  +  L++ ++K+   GL       + +++TH+   ++R  DR+  + +GK++  G   E F + +     QF
Sbjct:  134 KDVYPSNLSGGQKQRVAIARALASD-------PKVLLCDEATSALDPVTTQSILQLLKEINKR--LGL-------TILLITHEMDVVKRICDRVAVIDQGKLIETGSVSEIFANPTTQLAQQF 240          

HSP 2 Score: 27.335 bits (59), Expect = 5.209e-13
Identity = 20/48 (41.67%), Postives = 24/48 (50.00%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            I ++FQ   L  S TV ENV   L   S    E I++ V E L  VGL
Sbjct:   84 IAMIFQHFNLLSSQTVFENVALPL-RLSNTPTEHITKKVNELLELVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: CYSA_SYNE7 (Sulfate/thiosulfate import ATP-binding protein cysA OS=Synechococcus elongatus (strain PCC 7942) GN=cysA PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 5.209e-13
Identity = 38/127 (29.92%), Postives = 61/127 (48.03%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQF 574
            + G+ DR PS+LSGG ++RVALAR++       +V+P+VLL DEP   LD      +   +R +H +            + V VTH         D+++ +  GK+   G   E + + + P    F
Sbjct:  128 LTGLGDRYPSQLSGGQRQRVALARAL-------AVQPQVLLLDEPFGALDAKVRKDLRSWLRKLHDEVH---------VTTVFVTHDQEEAMEVADQIVVMNHGKVEQIGSPAEIYDNPATPFVMSF 238          

HSP 2 Score: 35.039 bits (79), Expect = 5.209e-13
Identity = 23/49 (46.94%), Postives = 29/49 (59.18%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +IG VFQ  ALF  LTVR+N+ F L E  K   E++   V+E L  V L
Sbjct:   81 QIGFVFQHYALFKHLTVRKNIAFGL-ELRKHTKEKVRARVEELLELVQL 128          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_XANC5 (Methionine import ATP-binding protein metN OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=metN PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.213e-13
Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG-MTHEFTSSSNPXCSQFAS 580
            +Q   ++ P++LSGG K+RV +AR++       +  P++LL DE T+ LDP  +  V  L+  +++  E GL       + V++TH+   IRR  DR+  L  GK+V  G +T  F    +    +F S
Sbjct:  130 LQEHANKYPAQLSGGQKQRVGIARAL-------ATRPQILLCDEATSALDPQTTASVLQLLAQINR--ELGL-------TIVLITHEMDVIRRVCDRVAVLDAGKLVETGPVTEVFLHPKHATTRRFVS 242          

HSP 2 Score: 31.187 bits (69), Expect = 5.213e-13
Identity = 23/50 (46.00%), Postives = 26/50 (52.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            RIG++FQ   L  S TV  NV F L      R E I   V E LA VGL+
Sbjct:   83 RIGMIFQHFNLLSSRTVAGNVAFPLELAGTPRAE-IDARVAELLARVGLQ 131          
The following BLAST results are available for this feature:
BLAST of FC932002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
ARTM_BACSU3.125e-1333.64Arginine transport ATP-binding protein artM OS=Bac... [more]
METN_LACAC4.007e-1327.20Methionine import ATP-binding protein metN OS=Lact... [more]
METN_RALSO4.008e-1335.85Methionine import ATP-binding protein metN OS=Rals... [more]
CYSA2_AGRT54.011e-1333.33Sulfate/thiosulfate import ATP-binding protein cys... [more]
GLNQ_ECOLI4.060e-1334.31Glutamine transport ATP-binding protein glnQ OS=Es... [more]
METN1_PSEAE5.198e-1332.54Methionine import ATP-binding protein metN 1 OS=Ps... [more]
METN1_PSEAB5.198e-1332.54Methionine import ATP-binding protein metN 1 OS=Ps... [more]
METN_HAEDU5.209e-1332.52Methionine import ATP-binding protein metN OS=Haem... [more]
CYSA_SYNE75.209e-1329.92Sulfate/thiosulfate import ATP-binding protein cys... [more]
METN_XANC55.213e-1332.56Methionine import ATP-binding protein metN OS=Xant... [more]

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Properties
Property NameValue
Genbank descriptionC34203F01EF PostHarveN Citrus clementina cDNA clone C34203F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932002 ID=FC932002; Name=FC932002; organism=Citrus clementina; type=EST; length=600bp
TGATGGCATTATGAGAAAGTAGTGTGCTTCGGATTGGATTGGTTTTCCAA
AGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAAAATGTTGGTTTCCT
TCTGTATGAAAATTCGAAGATGCGTGATGAACAAATTTCAGAGCTTGTGA
AGGAAAATTTGGCTGCTGTTGGATTAAAGATCTGACTGAGCCTTGGATCC
AGGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAA
AGAGTTGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCGGT
GGAGCCAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCA
TTGCATCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGT
GAAAATGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTAC
TCACCAACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCT
ACGAGGGTAAGATTGTTTGGCAAGGAATGACCCATGAATTCACATCATCA
TCCAATCCAANTTGTTCACAGTTTGCATCAGGGAGCTTGGAAGGCCAATC
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