FC932002

Overview
NameFC932002
Unique NameFC932002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_XANAC (Methionine import ATP-binding protein metN OS=Xanthomonas axonopodis pv. citri GN=metN PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.213e-13
Identity = 42/129 (32.56%), Postives = 69/129 (53.49%), Query Frame = 2 
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG-MTHEFTSSSNPXCSQFAS 580
            +Q   ++ P++LSGG K+RV +AR++       +  P++LL DE T+ LDP  +  V  L+  +++  E GL       + V++TH+   IRR  DR+  L  GK+V  G +T  F    +    +F S
Sbjct:  130 LQEHANKYPAQLSGGQKQRVGIARAL-------ATRPQILLCDEATSALDPQTTASVLQLLAQINR--ELGL-------TIVLITHEMDVIRRVCDRVAVLDAGKLVETGPVTEVFLHPKHATTRRFVS 242

HSP 2 Score: 31.187 bits (69), Expect = 5.213e-13
Identity = 23/50 (46.00%), Postives = 26/50 (52.00%), Query Frame = 3 
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            RIG++FQ   L  S TV  NV F L      R E I   V E LA VGL+
Sbjct:   83 RIGMIFQHFNLLSSRTVAGNVAFPLELAGTPRAE-IDARVAELLARVGLQ 131
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_BORPE (Methionine import ATP-binding protein metN OS=Bordetella pertussis GN=metN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.755e-13
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 538
            ++ + DR PS++SGG K+RV +AR++  D       P+VLL DE T+ LDP  +  +  L+R +++K            + V++THQ   +R   DR+  L  G++V  G T E
Sbjct:  130 LEHLRDRYPSQISGGQKQRVGIARALAND-------PDVLLSDEATSALDPETTHNILALLRDINRK---------TGVTVVMITHQMEVVREICDRVAVLSHGEVVELGSTRE 227

HSP 2 Score: 25.7942 bits (55), Expect = 6.755e-13
Identity = 20/50 (40.00%), Postives = 26/50 (52.00%), Query Frame = 3 
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            RIG+VFQ   L    TV  NV   L E + +   +I   V+  LA VGL+
Sbjct:   83 RIGMVFQGFNLLARRTVYGNVALPL-EIAGVARAEIPARVERLLALVGLE 131
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_BORPA (Methionine import ATP-binding protein metN OS=Bordetella parapertussis GN=metN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.755e-13
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 538
            ++ + DR PS++SGG K+RV +AR++  D       P+VLL DE T+ LDP  +  +  L+R +++K            + V++THQ   +R   DR+  L  G++V  G T E
Sbjct:  130 LEHLRDRYPSQISGGQKQRVGIARALAND-------PDVLLSDEATSALDPETTHNILALLRDINRK---------TGVTVVMITHQMEVVREICDRVAVLSHGEVVELGSTRE 227

HSP 2 Score: 25.7942 bits (55), Expect = 6.755e-13
Identity = 20/50 (40.00%), Postives = 26/50 (52.00%), Query Frame = 3 
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            RIG+VFQ   L    TV  NV   L E + +   +I   V+  LA VGL+
Sbjct:   83 RIGMVFQGFNLLARRTVYGNVALPL-EIAGVARAEIPARVERLLALVGLE 131
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_BORBR (Methionine import ATP-binding protein metN OS=Bordetella bronchiseptica GN=metN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.755e-13
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE 538
            ++ + DR PS++SGG K+RV +AR++  D       P+VLL DE T+ LDP  +  +  L+R +++K            + V++THQ   +R   DR+  L  G++V  G T E
Sbjct:  130 LEHLRDRYPSQISGGQKQRVGIARALAND-------PDVLLSDEATSALDPETTHNILALLRDINRK---------TGVTVVMITHQMEVVREICDRVAVLSHGEVVELGSTRE 227

HSP 2 Score: 25.7942 bits (55), Expect = 6.755e-13
Identity = 20/50 (40.00%), Postives = 26/50 (52.00%), Query Frame = 3 
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            RIG+VFQ   L    TV  NV   L E + +   +I   V+  LA VGL+
Sbjct:   83 RIGMVFQGFNLLARRTVYGNVALPL-EIAGVARAEIPARVERLLALVGLE 131
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_LACS1 (Methionine import ATP-binding protein metN OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=metN PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.760e-13
Identity = 40/133 (30.08%), Postives = 71/133 (53.38%), Query Frame = 2 
Query:  203 GVEDRL---PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            G+ED+    P +LSGG ++RVA+AR++  D       PE+L+ DE T+ LDP  +  + DL++ ++ K   GL       + V++TH+   ++R  +++  +  G I+ +G   + +         QF  GSL
Sbjct:  137 GLEDKAKFYPIQLSGGEQQRVAIARALAND-------PEILISDESTSALDPRTTNQILDLLKELNAK--LGL-------TIVLITHEMDAVKRIANKIAIMEHGVIIEKGKLRDVYLRPKEELSRQFVGGSL 253

HSP 2 Score: 33.113 bits (74), Expect = 6.760e-13
Identity = 19/49 (38.78%), Postives = 28/49 (57.14%), Query Frame = 3 
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            IG++FQ   L +  TV +NV F L  +S + D++I E     L  VGL+
Sbjct:   92 IGMIFQHFNLLNETTVVDNVAFAL-RHSSLSDKEIEEKALNLLKLVGLE 139
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_LACDB (Methionine import ATP-binding protein metN OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=metN PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.762e-13
Identity = 37/124 (29.84%), Postives = 70/124 (56.45%), Query Frame = 2 
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            P++LSGG ++RVA+AR++  D       PE+LL DE T+ LDP  +  + DL++ +++  E GL       + V++TH+ + +++  +++  +  G++V  G   + F +       +F  GSL
Sbjct:  146 PAQLSGGQQQRVAIARALAND-------PEILLSDEATSALDPQTTIQILDLLKKLNR--ELGL-------TIVLITHEMAAVKKIANKVAVMENGRVVENGNLRDVFLAPKAELTQKFVGGSL 253

HSP 2 Score: 32.3426 bits (72), Expect = 6.762e-13
Identity = 17/50 (34.00%), Postives = 30/50 (60.00%), Query Frame = 3 
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +IG++FQ   L +  TV EN+ F L ++S + D+++ E   + L  V L+
Sbjct:   91 KIGMIFQQFNLLNETTVIENIAFAL-KHSDLSDDELEEKCHKLLKLVDLE 139
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_LACDA (Methionine import ATP-binding protein metN OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=metN PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.762e-13
Identity = 37/124 (29.84%), Postives = 70/124 (56.45%), Query Frame = 2 
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            P++LSGG ++RVA+AR++  D       PE+LL DE T+ LDP  +  + DL++ +++  E GL       + V++TH+ + +++  +++  +  G++V  G   + F +       +F  GSL
Sbjct:  146 PAQLSGGQQQRVAIARALAND-------PEILLSDEATSALDPQTTIQILDLLKKLNR--ELGL-------TIVLITHEMAAVKKIANKVAVMENGRVVENGNLRDVFLAPKAELTQKFVGGSL 253

HSP 2 Score: 32.3426 bits (72), Expect = 6.762e-13
Identity = 17/50 (34.00%), Postives = 30/50 (60.00%), Query Frame = 3 
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +IG++FQ   L +  TV EN+ F L ++S + D+++ E   + L  V L+
Sbjct:   91 KIGMIFQQFNLLNETTVIENIAFAL-KHSDLSDDELEEKCHKLLKLVDLE 139
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_CARHZ (Methionine import ATP-binding protein metN OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metN PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.769e-13
Identity = 38/121 (31.40%), Postives = 66/121 (54.55%), Query Frame = 2 
Query:  221 PSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG-MTHEFTSSSNPXCSQFAS 580
            P ELSGG K+RV +AR+I       +  P++LL DEPT+ LDP  +  +  L+  +++K   G+       + V++TH+   I    DR+  +  G++V +G +T  F +  +P   +F +
Sbjct:  137 PRELSGGQKQRVGIARAI-------AANPKILLCDEPTSALDPQTTGQILKLLAEINQK--LGI-------TIVIITHEMRVITEICDRVAVMDNGRVVEEGVVTDVFLNPWHPITKEFVN 241

HSP 2 Score: 33.113 bits (74), Expect = 6.769e-13
Identity = 23/49 (46.94%), Postives = 27/49 (55.10%), Query Frame = 3 
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +IG++FQ   L DS TV  NV F L      R EQI + V E L  VGL
Sbjct:   82 KIGMIFQHFNLLDSRTVFGNVAFPLEIGGYPR-EQIKKRVMEVLELVGL 129
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_ERWPY (Methionine import ATP-binding protein metN OS=Erwinia pyrifoliae GN=metN PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 6.776e-13
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 2 
Query:  203 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG-MTHEFTSSSNPXCSQF 574
            G E   PS+LSGG K+RV +AR++       +  P VLL DE T+ LDP  +  + +L+  +++K            + V++TH+   +R+   R+  + EG+IV +G +   FT    P   QF
Sbjct:  117 GKEQAYPSQLSGGQKQRVGIARAL-------ANNPNVLLCDEATSALDPQTTDAILELLLDINRK---------LWLTIVLITHEMHVVRKICHRVAVMEEGRIVEEGEVLSLFTHPQQPITRQF 225

HSP 2 Score: 30.8018 bits (68), Expect = 6.776e-13
Identity = 21/50 (42.00%), Postives = 28/50 (56.00%), Query Frame = 3 
Query:   27 LRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            L+I +VFQ   L  S TV EN+ F L + S      I + V+E +A VGL
Sbjct:   67 LKISMVFQHFNLLWSRTVSENIAFSL-QISGTSKSVIQDRVQELIALVGL 115
[Close]
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: ARTP_SHIFL (Arginine transport ATP-binding protein artP OS=Shigella flexneri GN=artP PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.846e-13
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 2 
Query:  212 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFAS 580
            DR P  LSGG ++RVA+AR+++       +EP+VLL+DEPTA LDP  +  +  +IR + +             + V+VTH+    R+   R++++  G IV QG    FT         + S
Sbjct:  136 DRYPLHLSGGQQQRVAIARALM-------MEPQVLLFDEPTAALDPEITAQIVSIIRELAETN----------ITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYLS 241

HSP 2 Score: 23.0978 bits (48), Expect = 6.846e-13
Identity = 9/20 (45.00%), Postives = 15/20 (75.00%), Query Frame = 3 
Query:   33 IGLVFQSAALFDSLTVRENV 92
            +G+VFQ   L+  LTV++N+
Sbjct:   84 VGMVFQQYNLWPHLTVQQNL 103
The following BLAST results are available for this feature:
BLAST of FC932002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
METN_XANAC5.213e-1332.56Methionine import ATP-binding protein metN OS=Xant... [more]
METN_BORPE6.755e-1334.21Methionine import ATP-binding protein metN OS=Bord... [more]
METN_BORPA6.755e-1334.21Methionine import ATP-binding protein metN OS=Bord... [more]
METN_BORBR6.755e-1334.21Methionine import ATP-binding protein metN OS=Bord... [more]
METN_LACS16.760e-1330.08Methionine import ATP-binding protein metN OS=Lact... [more]
METN_LACDB6.762e-1329.84Methionine import ATP-binding protein metN OS=Lact... [more]
METN_LACDA6.762e-1329.84Methionine import ATP-binding protein metN OS=Lact... [more]
METN_CARHZ6.769e-1331.40Methionine import ATP-binding protein metN OS=Carb... [more]
METN_ERWPY6.776e-1332.00Methionine import ATP-binding protein metN OS=Erwi... [more]
ARTP_SHIFL6.846e-1333.33Arginine transport ATP-binding protein artP OS=Shi... [more]

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Properties
Property NameValue
Genbank descriptionC34203F01EF PostHarveN Citrus clementina cDNA clone C34203F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932002 ID=FC932002; Name=FC932002; organism=Citrus clementina; type=EST; length=600bp
TGATGGCATTATGAGAAAGTAGTGTGCTTCGGATTGGATTGGTTTTCCAA
AGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAAAATGTTGGTTTCCT
TCTGTATGAAAATTCGAAGATGCGTGATGAACAAATTTCAGAGCTTGTGA
AGGAAAATTTGGCTGCTGTTGGATTAAAGATCTGACTGAGCCTTGGATCC
AGGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAA
AGAGTTGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCGGT
GGAGCCAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCA
TTGCATCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGT
GAAAATGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTAC
TCACCAACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCT
ACGAGGGTAAGATTGTTTGGCAAGGAATGACCCATGAATTCACATCATCA
TCCAATCCAANTTGTTCACAGTTTGCATCAGGGAGCTTGGAAGGCCAATC
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