FC932009

Overview
NameFC932009
Unique NameFC932009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: FABG_RICTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 48/170 (28.24%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  172 LFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMK 681
            L H+ G+K++I+   +K  + L + L  +     C+++N++E  NL    +SK   LDI+  NAGI   +    +     D +++I++N    F+  + A + M+ ++ G I+  +S        G   Y  SK G++G+ K L+ E+   GI VN V+P  + + M+ K
Sbjct:   25 LLHKLGSKVIISGSNEKKLKLLGNTLKDNYIIEVCNLANKEECNNL----ISKISNLDILVCNAGITSDTLA--IRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDK 188          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  241 DKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP 696
            ++ G     +  D++ E++V+NLV TA+ +FG LD+M NNAG+ +      L     +  ++I+ N  G FLG++ A +  V    KG ++  +S    I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP
Sbjct:   53 EEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSL--DNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKQMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADP 203          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: BDH2_MOUSE (3-hydroxybutyrate dehydrogenase type 2 OS=Mus musculus GN=Bdh2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 52/183 (28.42%), Postives = 89/183 (48.63%), Query Frame = 1
Query:  106 RLEGKVXXXXXXXXXXXXXXVELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPA-YTISKYGILGLVKCLAAELGQYGIRVNCVSP 651
            RL+GKV                 F   GAK++  D+ +   +EL    G     +  D++ + ++    D   S+  ++D+++N AG +    G+ILD  + D +  +N+N    FL  K     M+ Q+ G I+  +S  + I G+ +   Y+ +K  ++GL K +AA+  Q GIR NCV P
Sbjct:    3 RLDGKVIVLTAAAQGIGRASALAFAREGAKVIATDINESKLQELESYRGIQTRVL--DVTKKRQI----DQFASEIERIDVLFNVAGFVHH--GTILDCEEKDWDFSMNLNVRSMFLMIKAFLPKMLAQKSGNIINMSSVASSIKGVENRCVYSATKAAVIGLTKSVAADFIQQGIRCNCVCP 177          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: BAIA2_EUBSP (Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (strain VPI 12708) GN=baiA2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  169 ELFHENGAKL-VIADVQDKLGEELADKLG----QDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS 675
            ++F +NGAK+ +  + Q+++   LA        ++V     D+++ D V+  V     K+G+LD+M NNAGI   +  S +   + + + ++++N  G F GA  A + M   +KG I+ TAS       L    Y  SK  ++GL   L  E+ +  IRV  V+P  + T M+
Sbjct:   24 KIFIDNGAKVSIFGETQEEVDTALAQLKELYPEEEVLGFAPDLTSRDAVMAAVGQVAQKYGRLDVMINNAGITSNNVFSRVS--EEEFKHIMDINVTGVFNGAWCAYQCMKDAKKGVIINTASVTGIFGSLSGVGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDMT 195          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: BPHB_PSEPS (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Pseudomonas pseudoalcaligenes GN=bphB PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 54/165 (32.73%), Postives = 87/165 (52.73%), Query Frame = 1
Query:  190 AKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDL----ERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            AK+ + D   +   EL   LG +V  I  D+ + ++        V++FGK+D +  NAGI D S  +++D P+  L    + + ++N + G++ A  A   +V   +G ++FT S        G P YT +K  I+GLV+ LA EL  Y +RVN V P G+ + M
Sbjct:   29 AKVAVLDKSAERLAELETDLGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYS-TALVDLPEESLDAAFDEVFHIN-VKGYIHAVKALPALV-ASRGNVIFTISNAGFYPNGGGPLYTAAKQAIVGLVRELAFELAPY-VRVNGVGPGGMNSDM 189          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: BPHB_BURXL (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=bphB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 53/169 (31.36%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGL 660
            V+ F   GAK+ + D   +   EL    G +V  I  D+ + ++        V++FGK+D +  NAGI D S  +++D P+  L+     + ++N + G++ A  A    +   +G ++FT S        G P YT +K+ I+GLV+ LA EL  Y +RVN V   G+
Sbjct:   22 VDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYST-ALVDLPEESLDAAFDEVFHIN-VKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELAFELAPY-VRVNGVGSGGI 187          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: YUXG_BACSU (Uncharacterized oxidoreductase yuxG OS=Bacillus subtilis GN=yuxG PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 53/176 (30.11%), Postives = 89/176 (50.57%), Query Frame = 1
Query:  175 FHENGAKLVIADVQ----DKLGEELADKLGQD-VCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKG-CILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKG 684
            F   G  +++AD+      K+  E+ D  G+     +  D++ E++V +  + A   +G +DI+ NNAG+   S     +T   +    +NV   G FL A+ A + M  Q +G  ++F  S  +  AG  + AY+  K     L +C+AAE G++GIRVN V P  +  G ++ G
Sbjct:  447 FAAEGGHVIVADLNIEGAQKIAGEINDAYGKGRAMAVKMDVTKEEDVQSAFERAALAYGGIDIVVNNAGLATSS--PFDETSLKEWNLNMNVLGTGYFLVAREAFKQMKHQNRGGSMVFVGSKNSVYAGKNASAYSSVKALETHLARCIAAEGGEFGIRVNSVLPDAVLQGSAIWG 620          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: FABG_RICPR (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia prowazekii GN=fabG PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 47/170 (27.65%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  172 LFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMK 681
            L H+ G+K++I+   ++  + L + L  +     C+++N++E  NL    +SK   LDI+  NAGI   +    +     D +++I++N    F+  + A + M+ ++ G I+  +S        G   Y  SK G++G+ K L+ E+   GI VN V+P  + + M+ K
Sbjct:   25 LLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNL----ISKTSNLDILVCNAGITSDTLA--IRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDK 188          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  241 DKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP 696
            ++ G     +  D++ E++V+NLV TA+ +FG LD+M NNAG+ +      L     +  ++I+ N  G FLG++ A +  V    KG ++  +S    I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP
Sbjct:   53 EEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSL--DNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADP 203          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 1
Query:  241 DKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP 696
            ++ G     +  D++ E++V+NLV TA+ +FG LD+M NNAG+ +      L     +  ++I+ N  G FLG++ A +  V    KG ++  +S    I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP
Sbjct:   53 EEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSL--DNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADP 203          
The following BLAST results are available for this feature:
BLAST of FC932009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
FABG_RICTY9.024e-1328.243-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
DHG3_BACME9.024e-1330.72Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
BDH2_MOUSE9.024e-1328.423-hydroxybutyrate dehydrogenase type 2 OS=Mus musc... [more]
BAIA2_EUBSP9.024e-1329.89Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (st... [more]
BPHB_PSEPS1.179e-1232.73Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
BPHB_BURXL1.179e-1231.36Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
YUXG_BACSU1.539e-1230.11Uncharacterized oxidoreductase yuxG OS=Bacillus su... [more]
FABG_RICPR1.539e-1227.653-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
DHGA_BACME1.539e-1230.72Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
DHG4_BACME1.539e-1230.72Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]

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Properties
Property NameValue
Genbank descriptionC34203F10EF PostHarveN Citrus clementina cDNA clone C34203F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932009 ID=FC932009; Name=FC932009; organism=Citrus clementina; type=EST; length=701bp
GAAGCCATACCTAGTTTCTTGTTTCTAACCCCTTCTCTGCTTTTAATTAG
TTTCAGGTTTTTGAAGAAAAAAATGAACGGCCCTTCCTCTGCAGCTCCCT
TCAAAAGGTTAGAAGGCAAAGTGGCAATCATCACCGGAGGAGCAAGCGGC
ATCGGAGCAACGGCGGTTGAACTCTTCCATGAAAATGGCGCCAAACTTGT
TATTGCCGATGTCCAGGATAAGCTTGGCGAAGAACTTGCTGATAAGCTGG
GCCAAGATGTTTGCTACATCCATTGTGATATCTCAAATGAAGATGAAGTC
ATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGATATCAT
GTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTTTGGACA
CTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATAGGTGGT
TTCTTAGGAGCCAAGCATGCTGCAAGAGTCATGGTGCCACAGCAAAAAGG
TTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGCTTGGCT
CCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTAAAGTGC
TTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGTCTCGCC
TTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATCCGGCTC
T
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