FC932009

Overview
NameFC932009
Unique NameFC932009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCAB_ECOBW (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=hcaB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            VE F E GA++   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCAB_ECO8A (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=hcaB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            VE F E GA++   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALISSE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCAB_ECO55 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            VE F E GA++   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCAB_ECO24 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.624e-17
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            VE F E GA++   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCAB_ECO5E (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            VE F E GA++   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIAGE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCAB_ECO57 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O157:H7 GN=hcaB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.887e-17
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            VE F E GA++   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIAGE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HSD_STREX (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Streptomyces exfoliatus PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 59/169 (34.91%), Postives = 90/169 (53.25%), Query Frame = 1
Query:  187 GAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSD-LERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGV 690
            GA++V+ADV D+ G   A +LG    Y H D++ E++   +V  A  +FG +D + NNAGI   S G  L+T   +   +++++N  G F+G K     M     G I+  +SA   +    + +Y  SK+G+ GL K  A ELG   IRVN V P    T M+ + G+
Sbjct:   30 GARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGI---STGMFLETESVERFRKVVDINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGI 195          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCAB_ECOSM (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.030e-16
Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            VE F E GA++   ++       L  + G+ +  +  +++   +    +D  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRALDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLU (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 672
            VE F E GA++   ++       L  + G+ +  +  +++   +    V+  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVNQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: FABG1_SYNY3 (3-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Synechocystis sp. (strain PCC 6803) GN=fabG1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.757e-16
Identity = 51/169 (30.18%), Postives = 88/169 (52.07%), Query Frame = 1
Query:  190 AKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP 696
            A  V+A++    GE +A         +  +++N DEV  L+ T + KF ++D++ NNAGI   +   +L     D + +I++N  G FL  K  +++M+ Q+ G I+   S    +   G   Y+ +K G++G  K +A EL   G+ VN V+P  +AT M+     +P
Sbjct:   44 ADAVVAEIIANGGEAIA---------VQANVANADEVDQLIKTTLDKFSRIDVLVNNAGITRDTL--LLRMKLEDWQAVIDLNLTGVFLCTKAVSKLMLKQKSGRIINITSVAGMMGNPGQANYSAAKAGVIGFTKTVAKELASRGVTVNAVAPGFIATDMTENLNAEP 201          
The following BLAST results are available for this feature:
BLAST of FC932009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
HCAB_ECOBW4.624e-1733.533-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO8A4.624e-1733.533-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO554.624e-1733.533-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO244.624e-1733.533-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO5E7.887e-1733.533-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO577.887e-1733.533-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HSD_STREX1.030e-1634.913-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HCAB_ECOSM1.030e-1632.953-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOLU1.757e-1632.953-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
FABG1_SYNY31.757e-1630.183-oxoacyl-[acyl-carrier-protein] reductase 1 OS=Sy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203F10EF PostHarveN Citrus clementina cDNA clone C34203F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932009 ID=FC932009; Name=FC932009; organism=Citrus clementina; type=EST; length=701bp
GAAGCCATACCTAGTTTCTTGTTTCTAACCCCTTCTCTGCTTTTAATTAG
TTTCAGGTTTTTGAAGAAAAAAATGAACGGCCCTTCCTCTGCAGCTCCCT
TCAAAAGGTTAGAAGGCAAAGTGGCAATCATCACCGGAGGAGCAAGCGGC
ATCGGAGCAACGGCGGTTGAACTCTTCCATGAAAATGGCGCCAAACTTGT
TATTGCCGATGTCCAGGATAAGCTTGGCGAAGAACTTGCTGATAAGCTGG
GCCAAGATGTTTGCTACATCCATTGTGATATCTCAAATGAAGATGAAGTC
ATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGATATCAT
GTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTTTGGACA
CTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATAGGTGGT
TTCTTAGGAGCCAAGCATGCTGCAAGAGTCATGGTGCCACAGCAAAAAGG
TTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGCTTGGCT
CCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTAAAGTGC
TTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGTCTCGCC
TTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATCCGGCTC
T
back to top