FC932009

Overview
NameFC932009
Unique NameFC932009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCD2_BOVIN (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taurus GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  187 GAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKS----DLERLINVNTIGGFLGAKHAARVMVPQ------QKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSP 651
            GA  V+ D+ +  GE  A KLG+   +   D+++E +V   +  A  KFG++D+  N AGI   S    L   ++    D +R+INVN IG F   +  A  M         Q+G I+ TAS       +G  AY+ SK GI+G+   +A +L   GIRV  ++P
Sbjct:   34 GATAVLLDLPNSDGETQAKKLGKSCAFAPADVTSEKDVQAALTLAREKFGRVDVAVNCAGIAVASKTYNLKKSQAHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPMGIRVMTIAP 198          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 63/201 (31.34%), Postives = 95/201 (47.26%), Query Frame = 1
Query:  109 LEGKVXXXXXXXXXXXXXXVELFHENGAKLVIADVQDKLG----EELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP 696
            L+GKV                 F +  AK+VI    +K      +E   K G +   +  D++ E++V N+V TA+ +FG LDIM NNAG L+    S  + P  D +++I  N  G FLG++ A +  V    KG ++  +S    I       Y  SK GI  + + LA E    GIRVN + P  + T ++ +   DP
Sbjct:    5 LKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQDPNEVKEEVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEFGTLDIMINNAG-LENPVPS-HEMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADP 203          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: Y1627_STAS1 (Uncharacterized oxidoreductase SSP1627 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1627 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 57/174 (32.76%), Postives = 90/174 (51.72%), Query Frame = 1
Query:  166 VELFHENGAKLVIADVQDKLGEELADKLGQDVCYIH-CDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSD-LERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYG--IRVNCVSPYGLATGMS 675
            V L  ENGAKLV+   +    E++  K+G D   I   D++  DEV  L++TA + FG++D++ NNAG++ +SF   L+  K D   ++I+VN  G   G       M  Q+ G I+  AS    +   GS  Y  +KY +  + + L  E    G  IR   +SP  ++T ++
Sbjct:   23 VNLLSENGAKLVLGARRLDRLEKIQQKVGHDSVSIKKTDVTKPDEVNALIETAYNDFGRIDVLINNAGLMPQSF---LEKNKQDEWNQMIDVNIKGVLYGIGAVLPYMRKQKSGHIINLASVAGHVVFPGSAVYCGTKYAVRAITEGLRQEEAIVGSNIRTTILSPGAVSTELT 193          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: SDR1_PICAB (Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 60/183 (32.79%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  181 ENGAKLVIADVQDK-LGEELADKL-------GQDVCYIHC--DISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPA 699
            E GAK+VI    ++   EE+A  +       G  V  I C  D++   +V  L DTA   FG L I+ NNAG+ D  + ++  T   + +R+  VN  G FL ++ AA+ +V    G I+  +S+   +      AYT SK  +  + + LA EL    I  NCV+P  +AT M   G  + A
Sbjct:   43 EKGAKVVIHYSSNQHAAEEVASIINNKSPSSGDGVRAIVCKADVAEPSQVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTSDEEWDRIFQVNCKGAFLCSREAAKRVVRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCVAPGPVATDMFFAGKSEAA 225          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: FABG_CHLMU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Chlamydia muridarum GN=fabG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 50/173 (28.90%), Postives = 87/173 (50.29%), Query Frame = 1
Query:  169 ELFHENGAKLVIADVQDKLG----EELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS 675
            +LF E+GA + I  + ++ G    ++L+DK G  V +   D+S  D V   V   ++++G +D++ NNAGI   S   ++   + +   +I+ N    +       R M+  + G I+  +S        G   Y  +K GI+G  K L+ E+G   IRVNC++P  + T M+
Sbjct:   25 KLFAEHGANVQIWGINEEAGKSAAQDLSDKTGSKVSFALVDVSKNDMVSAQVQKFLAEYGTIDVVVNNAGITRDSL--LMRMSEEEWSSVIDTNLGSIYNVCSAVIRPMIKARSGAIVNISSIVGLRGSPGQTNYAAAKAGIIGFSKALSKEVGSKNIRVNCIAPGFIDTDMT 195          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 47/139 (33.81%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  277 DISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVD 693
            D+S E +V  ++ TAV  +G +D++ NNAGI   +   ++   KS  + +I++N  G FL  + A ++M+ ++KG I+  AS    I  +G   Y  +K G++G  K  A E     I VN V P  +A+ M+ K G D
Sbjct:  143 DVSKEADVDAMMKTAVDAWGTIDVVVNNAGITRDTL--LIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED 279          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: LIMC_RHOER ((-)-trans-carveol dehydrogenase OS=Rhodococcus erythropolis GN=limC PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 60/176 (34.09%), Postives = 93/176 (52.84%), Query Frame = 1
Query:  187 GAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVP-----QQKGCILFTASACTEIAGLGSPA----YTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGG 687
            G  L  AD  D+  +++ + LG+    IH D+ + + +   VD AVS  G+LDI+  NAGI    F S  D P +   ++I++N      G  H A+V VP     ++ G I+ T+SA    AGL   A    Y+ +K+G++GL++ LA EL  + +RVN + P  + T M    G
Sbjct:   46 GYPLGTADELDQTAKDV-ENLGRKAIVIHADVRDLESLTAEVDRAVSTLGRLDIVSANAGIASVPFLS-HDIPDNTWRQMIDIN----LTGVWHTAKVAVPHILAGERGGSIVLTSSA----AGLKGYAQISHYSAAKHGVVGLMRSLALELAPHRVRVNSLHPTQVNTPMIQNEG 211          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 53/172 (30.81%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  175 FHENGAKLVIADVQDKLGEELA----DKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDT-PKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS 675
            F   G ++   D+  +  EE A          V  +  D+++E +V   +   + +FG +D++ NNAGI   S   +L T P    ++++ VN  G FLG +     M+ Q  G I+  AS  + +A  G  AYT SK  +L L K +A +    GIR N V P  + T M+
Sbjct:   22 FLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMT 193          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: HCD2_RAT (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus norvegicus GN=Hsd17b10 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  187 GAKLVIADVQDKLGEELADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGI--LDRSFGSILDTPKS--DLERLINVNTIGGFLGAKHAARVMVPQ------QKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLAT 666
            GA  V+ DV +  GE  A KLG +  +   ++++E EV   +  A  KFG++D+  N AGI    +++    +   +  D +R+INVN IG F   +  A VM         Q+G I+ TAS       +G  AY+ SK GI+G+   +A +L   GIRV  ++P   AT
Sbjct:   34 GATAVLLDVPNSEGETEAKKLGGNCIFAPANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVVTIAPGLFAT 203          
BLAST of FC932009 vs. ExPASy Swiss-Prot
Match: FABG3_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus GN=bkr3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 46/139 (33.09%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  277 DISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVD 693
            D+S E +V  ++ TA+  +G +D++ NNAGI   +   ++   KS  + +I++N  G FL  + A ++M+ ++KG I+  AS    I  +G   Y  +K G++G  K  A E     I VN V P  +A+ M+ K G D
Sbjct:  130 DVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTL--LIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED 266          
The following BLAST results are available for this feature:
BLAST of FC932009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
HCD2_BOVIN2.148e-1433.943-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taur... [more]
DHG_BACSU2.148e-1431.34Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
Y1627_STAS12.805e-1432.76Uncharacterized oxidoreductase SSP1627 OS=Staphylo... [more]
SDR1_PICAB2.805e-1432.79Short-chain type dehydrogenase/reductase OS=Picea ... [more]
FABG_CHLMU3.664e-1428.903-oxoacyl-[acyl-carrier-protein] reductase OS=Chla... [more]
FABG2_BRANA3.664e-1433.813-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
LIMC_RHOER4.785e-1434.09(-)-trans-carveol dehydrogenase OS=Rhodococcus ery... [more]
HCDR_XANP24.785e-1430.812-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
HCD2_RAT4.785e-1434.123-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus n... [more]
FABG3_BRANA4.785e-1433.093-oxoacyl-[acyl-carrier-protein] reductase 3, chlo... [more]

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Properties
Property NameValue
Genbank descriptionC34203F10EF PostHarveN Citrus clementina cDNA clone C34203F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932009 ID=FC932009; Name=FC932009; organism=Citrus clementina; type=EST; length=701bp
GAAGCCATACCTAGTTTCTTGTTTCTAACCCCTTCTCTGCTTTTAATTAG
TTTCAGGTTTTTGAAGAAAAAAATGAACGGCCCTTCCTCTGCAGCTCCCT
TCAAAAGGTTAGAAGGCAAAGTGGCAATCATCACCGGAGGAGCAAGCGGC
ATCGGAGCAACGGCGGTTGAACTCTTCCATGAAAATGGCGCCAAACTTGT
TATTGCCGATGTCCAGGATAAGCTTGGCGAAGAACTTGCTGATAAGCTGG
GCCAAGATGTTTGCTACATCCATTGTGATATCTCAAATGAAGATGAAGTC
ATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGATATCAT
GTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTTTGGACA
CTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATAGGTGGT
TTCTTAGGAGCCAAGCATGCTGCAAGAGTCATGGTGCCACAGCAAAAAGG
TTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGCTTGGCT
CCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTAAAGTGC
TTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGTCTCGCC
TTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATCCGGCTC
T
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