FC932010

Overview
NameFC932010
Unique NameFC932010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A3_CHICK (Eukaryotic initiation factor 4A-III OS=Gallus gallus GN=EIF4A3 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.130e-71
Identity = 130/193 (67.36%), Postives = 163/193 (84.46%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+  +++V Q +D   RE QALIL+PTRELA Q +K +L +GD++N+Q HAC+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QVVLI
Sbjct:   26 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 218          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A3_BOVIN (Eukaryotic initiation factor 4A-III OS=Bos taurus GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 269.626 bits (688), Expect = 1.130e-71
Identity = 130/193 (67.36%), Postives = 163/193 (84.46%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+  +++V Q +D   RE QALIL+PTRELA Q +K +L +GD++N+Q HAC+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QVVLI
Sbjct:   25 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 217          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A3_MOUSE (Eukaryotic initiation factor 4A-III OS=Mus musculus GN=Eif4a3 PE=2 SV=3)

HSP 1 Score: 269.24 bits (687), Expect = 1.476e-71
Identity = 130/193 (67.36%), Postives = 163/193 (84.46%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+  +++V Q +D   RE QALIL+PTRELA Q +K +L +GD++N+Q HAC+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QVVLI
Sbjct:   25 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 217          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A3_XENTR (Eukaryotic initiation factor 4A-III OS=Xenopus tropicalis GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.927e-71
Identity = 130/193 (67.36%), Postives = 162/193 (83.94%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+L +GD++N+Q HAC+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QV LI
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLI 221          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A3_DANRE (Eukaryotic initiation factor 4A-III OS=Danio rerio GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.927e-71
Identity = 130/193 (67.36%), Postives = 162/193 (83.94%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+L +GD++N+Q HAC+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QV LI
Sbjct:   20 KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLI 212          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: I4A3A_XENLA (Eukaryotic initiation factor 4A-III-A OS=Xenopus laevis GN=eif4a3-A PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.927e-71
Identity = 130/193 (67.36%), Postives = 162/193 (83.94%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+L +GD++N+Q HAC+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QV LI
Sbjct:   29 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLI 221          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A3_SALSA (Eukaryotic initiation factor 4A-III OS=Salmo salar GN=eif4a3 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.294e-71
Identity = 129/193 (66.84%), Postives = 162/193 (83.94%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PTRELA Q +KV+L +GD++N+Q H+C+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QV LI
Sbjct:   20 KIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLI 212          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A3_MACFA (Eukaryotic initiation factor 4A-III OS=Macaca fascicularis GN=EIF4A3 PE=2 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 4.294e-71
Identity = 129/193 (66.84%), Postives = 162/193 (83.94%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ FET+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQRA+  IIKGRDVIAQ+QSGTGKT+  +++V Q +D   RE QALIL+P RELA Q +K +L +GD++N+Q HAC+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QVVLI
Sbjct:   25 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPARELAVQIQKGLLTLGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLI 217          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: I4A3B_XENLA (Eukaryotic initiation factor 4A-III-B OS=Xenopus laevis GN=eif4a3-B PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.747e-70
Identity = 126/190 (66.32%), Postives = 160/190 (84.21%), Query Frame = 3
Query:  135 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            F+T+E V+   +FD MG+++DLLRGIY YGFEKPSAIQQ+A+  IIKGRDVIAQ+QSGTGKT+   ++V Q +D   RE QALIL+PT+ELA Q +KV+L +GD++N+Q HAC+ G +VGEDIRKL++G HVV+GTPGRV DMI+R++LRTRAIK+LVLDE+DEML++GFK  IYDVYRYLPP  QV LI
Sbjct:   31 FQTSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKELARQIQKVLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLI 220          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: FAL1_CRYNE (ATP-dependent RNA helicase FAL1 OS=Cryptococcus neoformans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.804e-69
Identity = 123/193 (63.73%), Postives = 161/193 (83.42%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            K+VFE++E V    +F+A+ +K+DLLRGIY Y FEKPSAIQQRA++ II+GRDVIAQAQSGTGKT+  ++++ Q++DT+ RE QAL+LSPTRELA Q + V+L +GD++N+  HAC+ G SVGEDIRKLE G  VVSGTPGRV DMI+R+ LRT+ IK+L+LDESDE+L++GFK  IYD+YRYLPP  QVV++
Sbjct:   10 KLVFESSEAVTVAPTFEALNLKEDLLRGIYAYNFEKPSAIQQRAIIPIIRGRDVIAQAQSGTGKTATFSISMLQSIDTNLRETQALVLSPTRELAVQIQTVVLALGDYMNVSCHACIGGTSVGEDIRKLEAGQQVVSGTPGRVFDMIRRRNLRTKDIKMLILDESDELLNKGFKDQIYDIYRYLPPATQVVVV 202          
The following BLAST results are available for this feature:
BLAST of FC932010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A3_CHICK1.130e-7167.36Eukaryotic initiation factor 4A-III OS=Gallus gall... [more]
IF4A3_BOVIN1.130e-7167.36Eukaryotic initiation factor 4A-III OS=Bos taurus ... [more]
IF4A3_MOUSE1.476e-7167.36Eukaryotic initiation factor 4A-III OS=Mus musculu... [more]
IF4A3_XENTR1.927e-7167.36Eukaryotic initiation factor 4A-III OS=Xenopus tro... [more]
IF4A3_DANRE1.927e-7167.36Eukaryotic initiation factor 4A-III OS=Danio rerio... [more]
I4A3A_XENLA1.927e-7167.36Eukaryotic initiation factor 4A-III-A OS=Xenopus l... [more]
IF4A3_SALSA4.294e-7166.84Eukaryotic initiation factor 4A-III OS=Salmo salar... [more]
IF4A3_MACFA4.294e-7166.84Eukaryotic initiation factor 4A-III OS=Macaca fasc... [more]
I4A3B_XENLA4.747e-7066.32Eukaryotic initiation factor 4A-III-B OS=Xenopus l... [more]
FAL1_CRYNE1.804e-6963.73ATP-dependent RNA helicase FAL1 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionC34203F11EF PostHarveN Citrus clementina cDNA clone C34203F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932010 ID=FC932010; Name=FC932010; organism=Citrus clementina; type=EST; length=706bp
GACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGCAATTG
TTGCGACTTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAGAGG
AGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGAAG
GAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATCTG
TTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAACA
GAGGGCCGTTATGGCGATAATAAAGGGCCGTGATGTAATTGCACAGGCCC
AGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGACG
GTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACGAG
GGAGCTGGCGACGCAGACAGAGAAAGTGATTTTGGTAATTGGTGATTTTA
TTAACATACAAGCACATGCGTGTGTTGAAGGCAAAAGTGTCGGGGAGGAT
ATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGGTAG
AGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAAT
TATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAGGGA
TCAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTGTTTT
GATATC
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