FC932010

Overview
NameFC932010
Unique NameFC932010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.299e-51
Identity = 100/196 (51.02%), Postives = 146/196 (74.49%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML--SRGFKGSIYDVYRYLPPDLQVVLI 704
            K+ F+T++ ++   +F++M +KDDLLRGIY YGFE PSAIQ RA+  II G DVIAQAQSGTGKT+   + + Q +D   +++QAL+LSPTRELA+Q  +V+  +GD++N+Q++A   GK++ +D+ +++ +G  VVSGTPGRV DM KR  L TR +++L+LDE+DE+L  S GFK  IYD++  LP   QVV++
Sbjct:   10 KLKFKTSKKLKISPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAACQVVVV 205          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.696e-51
Identity = 98/182 (53.85%), Postives = 130/182 (71.43%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVL 701
            E +  F+A+ ++ DLLRGI+ YGFEKPSAIQQR +  I+ G D I QAQSGTGKT+   +   Q +D S    Q L+L+PTRELA Q +KV L +GD+  ++ HACV G SV +D+ KL+ GVH+V GTPGRV DM+ +  LR   +KL +LDE+DEMLSRGFK  I+D+++ LP D+QV L
Sbjct:   28 EIVECFEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVAL 209          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.875e-50
Identity = 103/187 (55.08%), Postives = 134/187 (71.66%), Query Frame = 3
Query:  150 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHAC---VEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVL 701
            GV  I SFD M +  +LLRGIY YGFEKPS+IQQRA+    +G D+IAQAQSGTGKT   ++ + Q +D     +Q L+LSPTRELA QT +VI  IG+F++  A  C   V G  V +D+RKL+ GV V  GTPGRV D+IKR  LRT ++++LVLDE+DEMLS+GF   IY+++R+LP D+QV L
Sbjct:   21 GVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDIQVAL 207          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.178e-50
Identity = 102/187 (54.55%), Postives = 134/187 (71.66%), Query Frame = 3
Query:  150 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHAC---VEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVL 701
            GV  I SFD M +  +LLRGIY YGFEKPS+IQQRA+    +G D+IAQAQSGTGKT   ++ + Q +D     +Q L+LSPTRELA QT +VI  IG+F++  +  C   V G  V +D+RKL+ GV V  GTPGRV D+IKR  LRT ++++LVLDE+DEMLS+GF   IY+++R+LP D+QV L
Sbjct:   21 GVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDIQVAL 207          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.178e-50
Identity = 102/187 (54.55%), Postives = 134/187 (71.66%), Query Frame = 3
Query:  150 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHAC---VEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVL 701
            GV  I SFD M +  +LLRGIY YGFEKPS+IQQRA+    +G D+IAQAQSGTGKT   ++ + Q +D     +Q L+LSPTRELA QT +VI  IG+F++  +  C   V G  V +D+RKL+ GV V  GTPGRV D+IKR  LRT ++++LVLDE+DEMLS+GF   IY+++R+LP D+QV L
Sbjct:   21 GVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDIQVAL 207          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.588e-49
Identity = 93/181 (51.38%), Postives = 131/181 (72.38%), Query Frame = 3
Query:  162 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            +  FD + +K +++RGI+ YG+E PSAIQQRA++ I +GRDV+AQAQSGTGKT+   ++  Q +D + +  QALIL+PTRELA Q + VI  IG ++N+  HA + G S+ +DI   + GV +V GTPGRV DMI+R+  RT  +K+ +LDE+DEMLS GFK  IY+++R LP   QVVL+
Sbjct:   22 VYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDMIERRYFRTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLL 202          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.708e-49
Identity = 93/181 (51.38%), Postives = 132/181 (72.93%), Query Frame = 3
Query:  162 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            + SFD + +K +++RGI+ YG+E PSAIQQRA++ I +GRDV+AQAQSGTGKT+   ++  Q +D + +  QALIL+PTRELA Q + VI  IG ++N+  HA + G S+ +DI   + GV +V GTPGRV DMI+R+  RT  +K+ ++DE+DEMLS GFK  IY+++R LP   QVVL+
Sbjct:   21 VYSFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVLL 201          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.537e-49
Identity = 92/181 (50.83%), Postives = 132/181 (72.93%), Query Frame = 3
Query:  162 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            + +FD + +K +++RGI+ YG+E PSAIQQRA++ I +GRDV+AQAQSGTGKT+   ++  Q +D + +  QALIL+PTRELA Q + VI  IG ++N+  HA + G S+ +DI   + GV +V GTPGRV DMI+R+  +T  +K+ +LDE+DEMLS GFK  IY+++R LP   QVVL+
Sbjct:   22 VYTFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLL 202          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.619e-49
Identity = 92/183 (50.27%), Postives = 131/183 (71.58%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            + + SFD + +K++LLRGI+ YGF +PSAIQQRA++ II+G+DV+AQAQSGTGKT   ++   Q +D   +  Q LIL+PTRELA Q +KV++ +   ++++ HAC+ G S+ ED   L  G  ++ GTPGRV DMI R+  +T  IK+ +LDE+DEMLS GFK  IY+++  LPP  QVVL+
Sbjct:   19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLL 201          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.033e-49
Identity = 92/181 (50.83%), Postives = 130/181 (71.82%), Query Frame = 3
Query:  162 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            +  FD + +K +++RGI+ YG+E PSAIQQRA++ I +GRDV+AQAQSGTGKT+   ++  Q +D + +  QALIL+PTRELA Q + VI  IG ++N+  HA + G S+ +DI     GV VV GTPGRV DMI+R+  +T  +K+ ++DE+DEMLS GFK  IY+++R LP   QVVL+
Sbjct:   22 VYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDMIERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFRLLPETTQVVLL 202          
The following BLAST results are available for this feature:
BLAST of FC932010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_VANPO1.299e-5151.02ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
IF4A_CRYPV1.696e-5153.85Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A_LEIBR1.875e-5055.08Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIMA4.178e-5054.55Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN4.178e-5054.55Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LODEL1.588e-4951.38ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_PICGU2.708e-4951.38ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_DEBHA3.537e-4950.83ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_KLULA4.619e-4950.27ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A_PICST6.033e-4950.83ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203F11EF PostHarveN Citrus clementina cDNA clone C34203F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932010 ID=FC932010; Name=FC932010; organism=Citrus clementina; type=EST; length=706bp
GACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGCAATTG
TTGCGACTTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAGAGG
AGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGAAG
GAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATCTG
TTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAACA
GAGGGCCGTTATGGCGATAATAAAGGGCCGTGATGTAATTGCACAGGCCC
AGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGACG
GTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACGAG
GGAGCTGGCGACGCAGACAGAGAAAGTGATTTTGGTAATTGGTGATTTTA
TTAACATACAAGCACATGCGTGTGTTGAAGGCAAAAGTGTCGGGGAGGAT
ATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGGTAG
AGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAAT
TATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAGGGA
TCAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTGTTTT
GATATC
back to top