FC932010

Overview
NameFC932010
Unique NameFC932010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.433e-58
Identity = 107/183 (58.47%), Postives = 145/183 (79.23%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + SFD M +K +LLRG+Y YGFE+PSAIQQRA+M +IKG DVIAQAQSGTGKT+  +++V Q +D + ++ QALIL+PTRELA Q +KV++ IGDF+N++ HAC+ G SV +D++ L+ G  VV GTPGRV DMI+R+ L+T ++K+ VLDE+DEMLSRGF   IYD+++ LP   QVVL+
Sbjct:   22 ETVDSFDTMNLKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFMNVECHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLL 204          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.168e-58
Identity = 108/183 (59.02%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E   SFDAM ++ +LLRG+Y YGFE+PSAIQQRA+M +IKG DVIAQAQSGTGKT+  +++  Q VDT+ +  QALIL+PTRELA Q +KV++ IGDF++++ HAC+ G +V EDI+ L  G  VV GTPGRV DMI+R+ L+T  +K+ VLDE+DEMLSRGF   IYD++++LP   QVVL+
Sbjct:   22 EITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVECHACIGGTNVREDIKALNDGPQVVVGTPGRVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLL 204          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.286e-58
Identity = 104/183 (56.83%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + +FD M +K +LLRGIY YGFE+PSAIQQRA+M I+ GRD IAQAQSGTGKT+  ++++ Q +DT+ ++ QAL+L+PTRELA Q +KV++ +GD++N+  HACV G +V EDI +L  G H+V GTPGRV DMI R  L+T A+ +  LDE+DEMLS GFK SIY++++ LP + QVVL+
Sbjct:   25 EVVDNFDDMKLKGELLRGIYAYGFERPSAIQQRAIMPIVTGRDCIAQAQSGTGKTATFSVSILQRIDTTVKKTQALVLAPTRELAQQIQKVVIALGDYLNVDCHACVGGTAVREDIARLNEGPHIVVGTPGRVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLL 207          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.213e-57
Identity = 108/183 (59.02%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E   SFDAM +K +LLRG+Y YGFE+PSAIQQRA++ IIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALIL+PTRELA Q +KV++ IGDF+NI+ HAC+ G +V ED++ L+ G  VV GTPGRV DMI+R+ LRT  +K+ +LDE+DEMLSRGF   IYD+++ LP   QVVL+
Sbjct:   22 EITDSFDAMDLKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLL 204          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.584e-57
Identity = 108/183 (59.02%), Postives = 143/183 (78.14%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E   SFDAM ++ +LLRG+Y YGFE+PSAIQQRA+M +IKG DVIAQAQSGTGKT+  +++  Q VDT+ +  QALIL+PTRELA Q +KV++ IGDF++I+ HAC+ G SV ED++ L+ G  VV GTPGRV DMI+R+ L+T  +K+ VLDE+DEMLS GF   IYD++++LP   QVVL+
Sbjct:   22 EITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVLL 204          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 108/183 (59.02%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E   SFD+M +K +LLRGIY YGFE+PSAIQQRA++ IIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALIL+PTRELA Q +KV++ IGDF+NI+ HAC+ G +V ED++ L+ G  VV GTPGRV DMI+R+ LRT  +K+ +LDE+DEMLSRGF   IYD+++ LP   QVVL+
Sbjct:   22 EITDSFDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVREDMKALQEGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLL 204          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.702e-57
Identity = 108/183 (59.02%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E   SFD+M +K +LLRGIY YGFE+PSAIQQRA+M IIKG DVIAQAQSGTGKT+  +++  Q +D + +  QALIL+PTRELA Q +KV++ IGDF++++ HAC+ G +V ED++ L+ G  VV GTPGRV DMI+R+ LRT  +KL +LDE+DEMLSRGF   IYD+++ LP   QVVL+
Sbjct:   22 EITDSFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFMSLECHACIGGTNVREDMKALQDGPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLL 204          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.609e-57
Identity = 106/183 (57.92%), Postives = 142/183 (77.60%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E   SFDAM +K +LLRG+Y YGFE+PSAIQQRA+M +IKG DVIAQAQSGTGKT+  +++  Q +D++ +  QALIL+PTRELA Q +KV++ IGDF+++  HAC+ G SV +D++ L+ G  VV GTPGRV DMI+R+ L+T  +K+ VLDE+DEMLSRGF   IYD+++ LP   QVVL+
Sbjct:   20 ETTDSFDAMNLKAELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISTLQKIDSNVKACQALILAPTRELAQQIQKVVVAIGDFMDVACHACIGGTSVRDDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLL 202          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.861e-57
Identity = 107/195 (54.87%), Postives = 148/195 (75.90%), Query Frame = 3
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKGSIYDVYRYLPPDLQVVLI 704
            K+ F+T++ ++   +F++M +K DLLRGIY YGFE PS+IQ RA+  II G+DVIAQAQSGTGKT+   + + Q +D+ S+E+QAL+LSPTRELA+Q+E VI  +GD++N+ AHAC  GK++ +DI+K+     VVSGTPGRV DMIKR+ L  R  K+LVLDE+DE+L    GFK  IYD++  LPP +QVV++
Sbjct:   10 KLKFKTSKKLKVSATFESMNLKPDLLRGIYFYGFEYPSSIQSRAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVISNLGDYLNVTAHACTGGKALQQDIKKVSKNCQVVSGTPGRVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVV 204          
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A7_TOBAC (Eukaryotic initiation factor 4A-7 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.027e-56
Identity = 110/180 (61.11%), Postives = 137/180 (76.11%), Query Frame = 3
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQV 695
            E   SFDAMG++++LLRGIY YGFEKPSAIQQR ++   KG DVI QAQSGTGKT+     V Q +D S  E QAL+L+PTRELA Q EKV+  +GD++ ++ HACV G SV ED R L+ GVHVV GTPGRV DM++R++LR   IK+ VLDE+DEMLSRGFK  IYD+++ LPP +QV
Sbjct:   37 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQV 216          
The following BLAST results are available for this feature:
BLAST of FC932010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_BOTFB1.433e-5858.47ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
IF4A_COCIM4.168e-5859.02ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
IF4A_CRYNE9.286e-5856.83ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_ASPFU1.213e-5759.02ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A_AJECN1.584e-5759.02ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A_NEOFI2.702e-5759.02ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_ASPCL2.702e-5759.02ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
IF4A_PHANO4.609e-5757.92ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
FAL1_KLULA7.861e-5754.87ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
IF4A7_TOBAC1.027e-5661.11Eukaryotic initiation factor 4A-7 OS=Nicotiana tab... [more]

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Properties
Property NameValue
Genbank descriptionC34203F11EF PostHarveN Citrus clementina cDNA clone C34203F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932010 ID=FC932010; Name=FC932010; organism=Citrus clementina; type=EST; length=706bp
GACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGCAATTG
TTGCGACTTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAGAGG
AGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGAAG
GAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATCTG
TTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAACA
GAGGGCCGTTATGGCGATAATAAAGGGCCGTGATGTAATTGCACAGGCCC
AGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGACG
GTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACGAG
GGAGCTGGCGACGCAGACAGAGAAAGTGATTTTGGTAATTGGTGATTTTA
TTAACATACAAGCACATGCGTGTGTTGAAGGCAAAAGTGTCGGGGAGGAT
ATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGGTAG
AGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAAT
TATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAGGGA
TCAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTGTTTT
GATATC
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