FC932010

Overview
NameFC932010
Unique NameFC932010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13756 contig Ccv1_Contig13756:38..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A2_BOVIN (Eukaryotic initiation factor 4A-II OS=Bos taurus GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 101/184 (54.89%), Postives = 138/184 (75.00%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + +FD M +K+ LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +E QAL+L+PTRELA Q +KVIL +GD++    HAC+ G +V  +++KL+    H+V GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFK  IY++++ L   +QVVL+
Sbjct:   30 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLL 213
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: FAL1_CANGA (ATP-dependent RNA helicase FAL1 OS=Candida glabrata GN=FAL1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.617e-52
Identity = 100/196 (51.02%), Postives = 147/196 (75.00%), Query Frame = 3 
Query:  126 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS--RGFKGSIYDVYRYLPPDLQVVLI 704
            K+ F++++ ++   +F++M +K+ LLRGIY YGFE PSAIQ RA+  II G+DVIAQAQSGTGKT+   + + Q +D    ++QAL+LSPTRELA Q  KV+  +GD++N++A+A   GK++ +D++K++ HG  V+SGTPGRV DMIKR+ + TR +++LVLDE+DE+LS   GFK  IYD++  LP   QVV++
Sbjct:   10 KLKFKSSKKLKISATFESMDLKEGLLRGIYSYGFEAPSAIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQIGKVVTNLGDYMNVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVLDMIKRRLIETRHVQILVLDEADELLSDTLGFKHQIYDIFTKLPRTSQVVVV 205
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.418e-52
Identity = 98/184 (53.26%), Postives = 136/184 (73.91%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KV++ +GD++    HAC+ G +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFK  IYD+++ L  + QVVL+
Sbjct:   21 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLL 204
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.418e-52
Identity = 98/184 (53.26%), Postives = 136/184 (73.91%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KV++ +GD++    HAC+ G +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFK  IYD+++ L  + QVVL+
Sbjct:   29 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLL 212
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.418e-52
Identity = 98/184 (53.26%), Postives = 136/184 (73.91%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KV++ +GD++    HAC+ G +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFK  IYD+++ L  + QVVL+
Sbjct:   29 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLL 212
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.418e-52
Identity = 98/184 (53.26%), Postives = 136/184 (73.91%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KV++ +GD++    HAC+ G +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFK  IYD+++ L  + QVVL+
Sbjct:   29 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLL 212
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.418e-52
Identity = 98/184 (53.26%), Postives = 136/184 (73.91%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KV++ +GD++    HAC+ G +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFK  IYD+++ L  + QVVL+
Sbjct:   29 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLL 212
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.418e-52
Identity = 98/184 (53.26%), Postives = 136/184 (73.91%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + SFD M + + LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KV++ +GD++    HAC+ G +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFK  IYD+++ L  + QVVL+
Sbjct:   29 EIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLL 212
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.614e-52
Identity = 100/184 (54.35%), Postives = 137/184 (74.46%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + +FD M +K+ LLRGIY YGFEKPSAIQQRA++  IKG DVIAQAQSGTGKT+  A+++ Q ++   +E QAL+L+PTRELA Q +KVIL +GD++    HAC+ G +V  +++KL+    H+V GTPGRV DM+ R+ L  + IK+ VLDE+D MLSRGFK  IY++++ L   +QVVL+
Sbjct:   31 EIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQVVLL 214
[Close]
BLAST of FC932010 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.945e-52
Identity = 97/184 (52.72%), Postives = 136/184 (73.91%), Query Frame = 3 
Query:  156 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMAIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILVIGDFINIQAHACVEGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKGSIYDVYRYLPPDLQVVLI 704
            E + S D M + + LLRGIY YGFEKPSAIQQRA+++ IKG DVIAQAQSGTGKT+  A+++ Q ++   +  QAL+L+PTRELA Q +KV++ +GD++    HAC+ G +V  +++KL+    H++ GTPGRV DM+ R+ L  + IK+ VLDE+DEMLSRGFK  IYD+++ L  + QVVL+
Sbjct:   29 EIVDSLDDMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLL 212
The following BLAST results are available for this feature:
BLAST of FC932010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A2_BOVIN1.175e-5254.89Eukaryotic initiation factor 4A-II OS=Bos taurus G... [more]
FAL1_CANGA2.617e-5251.02ATP-dependent RNA helicase FAL1 OS=Candida glabrat... [more]
IF4A1_RABIT3.418e-5253.26Eukaryotic initiation factor 4A-I (Fragment) OS=Or... [more]
IF4A1_PANTR3.418e-5253.26Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE3.418e-5253.26Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_MACFA3.418e-5253.26Eukaryotic initiation factor 4A-I OS=Macaca fascic... [more]
IF4A1_HUMAN3.418e-5253.26Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN3.418e-5253.26Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
IF4A2_MACFA7.614e-5254.35Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
IF4A1_PONAB9.945e-5252.72Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionC34203F11EF PostHarveN Citrus clementina cDNA clone C34203F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932010 ID=FC932010; Name=FC932010; organism=Citrus clementina; type=EST; length=706bp
GACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGCAATTG
TTGCGACTTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAGAGG
AGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGAAG
GAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATCTG
TTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAACA
GAGGGCCGTTATGGCGATAATAAAGGGCCGTGATGTAATTGCACAGGCCC
AGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGACG
GTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACGAG
GGAGCTGGCGACGCAGACAGAGAAAGTGATTTTGGTAATTGGTGATTTTA
TTAACATACAAGCACATGCGTGTGTTGAAGGCAAAAGTGTCGGGGAGGAT
ATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGGTAG
AGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAAT
TATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAGGGA
TCAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTGTTTT
GATATC
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