FC932073

Overview
NameFC932073
Unique NameFC932073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC932073 vs. ExPASy Swiss-Prot
Match: PDHK2_CAEEL (Probable [pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Caenorhabditis elegans GN=pdhk-2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.334e-28
Identity = 91/262 (34.73%), Postives = 136/262 (51.91%), Query Frame = 2 
Query:    5 EKPAVFKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRVLIGQHVELHN---PNPPPHCIGYIDTKMSPVQVARNASEHAHCVCLREYGSAPDFNIY-------GDPSFTFPYVPSHLHLMVFELVKNSLRAVEERYMDSDKVAPPIRIIVADGLEDVTIKVSDEGGGIPRSGLPK-FSHIFTALPETLWMKHRSSS*QGNMAGYGYGL 754
            + P+   V +WY +SF DL  F    S+ ++   F   +  +  RH +VV  MA GL +L++     I  E    I  FLDRFY++RI IR+L  QH+ +     P  P H +G ID       V  +A E+A  +C R Y ++P   +        G P  +   VPSHL+ M+FEL KN++RA  E Y   D   P I++ V  G ED++IK+ D GGG+ R+ L + ++++++  P            Q  +AGYGYGL
Sbjct:   75 QMPSSKMVSNWYAESFEDLLLFEASDSSPEQVARFNDQLTVVLKRHAHVVETMAEGLIELRESDGVDIASEK--GIQYFLDRFYINRISIRMLQNQHLVVFGNVLPESPRH-VGCIDPACDVESVVYDAFENARFLCDRYYLTSPSMKLEMHNAVEKGKP-ISIVAVPSHLYHMMFELFKNAMRATVE-YHGVDDDLPDIKVYVVKGQEDLSIKICDRGGGVSRTILERLYNYMYSTAPPP-----PRDGTQAPLAGYGYGL 326
The following BLAST results are available for this feature:
BLAST of FC932073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PDHK2_CAEEL1.334e-2834.73Probable [pyruvate dehydrogenase [lipoamide]] kina... [more]

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Properties
Property NameValue
Genbank descriptionC34204D02EF PostHarveN Citrus clementina cDNA clone C34204D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932073 ID=FC932073; Name=FC932073; organism=Citrus clementina; type=EST; length=756bp
ATCCGAGAAGCCTGCCGTTTTCAAGGTTCGAGACTGGTATTTGGACTCAT
TTCGTGATTTGAGGTCGTTTCCTGACATCAGAAGTACGAGTGATGAGAGG
GATTTTACGCAAATGATTAAGGCGATTAAGGTGAGGCATAATAATGTGGT
GCCCATGATGGCGTTGGGGCTGCAACAATTGAAGAAAGAGATGGATCCCA
AGATTGTTTACGAGGATCTTCATGAGATTCATCAGTTTCTGGATCGGTTT
TACATGTCTAGGATCGGAATTCGTGTGCTTATTGGGCAGCATGTAGAATT
GCACAATCCCAACCCTCCACCTCATTGTATTGGCTACATAGACACAAAAA
TGTCTCCAGTGCAGGTTGCTAGGAATGCTAGTGAGCATGCACATTGTGTT
TGTCTGCGGGAGTATGGCAGTGCACCCGATTTTAATATCTACGGTGATCC
CAGTTTTACATTCCCTTACGTCCCTTCACACTTGCATCTCATGGTATTTG
AGTTGGTTAAGAACTCATTACGTGCTGTTGAAGAGCGTTATATGGACTCA
GATAAAGTTGCACCTCCTATTCGAATAATAGTTGCCGATGGATTAGAGGA
TGTTACTATTAAGGTTTCGGATGAGGGAGGTGGCATACCAAGAAGTGGTC
TTCCCAAATTTTCACATATCTTTACAGCACTGCCAGAAACCCTCTGGATG
AAACACCGATCTAGCAGCTGACAAGGGAACATGGCTGGGTATGGATATGG
GCTTCC
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