FC932118

Overview
NameFC932118
Unique NameFC932118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932118 vs. ExPASy Swiss-Prot
Match: DRS7B_BOVIN (Dehydrogenase/reductase SDR family member 7B OS=Bos taurus GN=DHRS7B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 57/193 (29.53%), Postives = 84/193 (43.52%), Query Frame = 3
Query:    9 VLPSNM*CLGLSVV---LHTSSSMAETAKRYAVVTGANKGIGYEVVRQLALNGVITVLTARDEKGGLEAVEKLKHSGFDNVIFHQ-----LDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEK-CLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSSLGKL 560
            +LP  + C+GL  +   L      A       V+TGA  G+G E  R     G   VL  R+ +   E  ++L  S    V  H+      D+ADP AI   A  I   FG +D+L+NNAGI+                  RG +  T    +K  ++TNY G   + +AL+P +       +V +SS  GK+
Sbjct:   24 ILPLLLGCVGLFSLFKLLQWLRMRAYVRNAVVVITGATSGLGRECARVFHAAGARLVLCGRNAEALEELSQELAASRAPGVQTHKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGIS-----------------YRGAIVDTSPDVDKRVMETNYFGPVALTKALLPAMIRRRQGHVVAISSIQGKI 199          
BLAST of FC932118 vs. ExPASy Swiss-Prot
Match: Y0419_STAS1 (Uncharacterized oxidoreductase SSP0419 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0419 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.038e-11
Identity = 50/162 (30.86%), Postives = 75/162 (46.30%), Query Frame = 3
Query:   69 MAETAKRYAVVTGANKGIGYEVVRQLALNGVITVLTARDEKGGLEAVEKLKHSGFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSSLG 554
            M E   + AVVTGA+ GIG  +   LA  GV  VLT RDE    E  ++++ +    V    +DV     +  + +  +  FG++DILVN+AG+         LS  I EG          E+ E  +  N  G      A++P +    S  I+N++S  G
Sbjct:    1 MVELQDKVAVVTGASSGIGASIAETLANQGVKVVLTGRDESRLAEVAKRIQDNKQAVVETSIVDVTHKEEVTELVEKTKEKFGQIDILVNSAGL--------MLSSAITEG--------DVEAWEAMIDVNIKGTLYTINAVLPSMLNQSSGHIINIASISG 146          
BLAST of FC932118 vs. ExPASy Swiss-Prot
Match: AYR1_YEAST (NADPH-dependent 1-acyldihydroxyacetone phosphate reductase OS=Saccharomyces cerevisiae GN=AYR1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 56/191 (29.32%), Postives = 88/191 (46.07%), Query Frame = 3
Query:   63 SSMAETAKRYAVVTGANKGIGYEVVRQLALNGVITVLTARDEKGGLEAVEKLK-HSGFDNVIFHQLDVADPAAIHSVADFIRSHF--GKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSSLGKLMY-----------VTHEWAKGV 593
            S +    K+ AVVTGA+ GIGYEV ++LA NG +    AR     LE + +L    G D++  ++LD++ P  I + + F+R++   GKLD+L NNAG                +      +  T  + E+C + N  G   MC  L   L +     IV   S  G + +             H++A+G+
Sbjct:    2 SELQSQPKKIAVVTGASGGIGYEVTKELARNGYLVYACAR----RLEPMAQLAIQFGNDSIKPYKLDISKPEEIVTFSGFLRANLPDGKLDLLYNNAG----------------QSCTFPALDATDAAVEQCFKVNVFGHINMCRELSEFL-IKAKGTIVFTGSLAGVVSFPFGSIYSASKAAIHQYARGL 171          
BLAST of FC932118 vs. ExPASy Swiss-Prot
Match: FABG_SALTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhimurium GN=fabG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = 3
Query:   87 RYAVVTGANKGIGYEVVRQLALNGVITVLTARDEKGGLEAVEKLKHSGFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSSLGKL 560
            + A+VTGA++GIG  +   L   G   + TA  E G     + L  +G   +    L+V DPA+I SV + IR+ FG++DILVNNAGIT      D L            M    +     ++TN     R+ +A++  +      RI+ + S +G +
Sbjct:    6 KIALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKNISDYLGANGKGLM----LNVTDPASIESVLENIRAEFGEVDILVNNAGIT-----RDNL-----------LMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTM 143          
BLAST of FC932118 vs. ExPASy Swiss-Prot
Match: FABG_SALTI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Salmonella typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = 3
Query:   87 RYAVVTGANKGIGYEVVRQLALNGVITVLTARDEKGGLEAVEKLKHSGFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSSLGKL 560
            + A+VTGA++GIG  +   L   G   + TA  E G     + L  +G   +    L+V DPA+I SV + IR+ FG++DILVNNAGIT      D L            M    +     ++TN     R+ +A++  +      RI+ + S +G +
Sbjct:    6 KIALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKNISDYLGANGKGLM----LNVTDPASIESVLENIRAEFGEVDILVNNAGIT-----RDNL-----------LMRMKDDEWNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTM 143          
BLAST of FC932118 vs. ExPASy Swiss-Prot
Match: DHR13_MOUSE (Dehydrogenase/reductase SDR family member 13 OS=Mus musculus GN=Dhrs13 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 50/155 (32.26%), Postives = 75/155 (48.39%), Query Frame = 3
Query:   87 RYAVVTGANKGIGYEVVRQLALNGVITVLTARD-EKGGLEAVEKLKHSGFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSSS 548
            R  VVTGAN GIG     +LA  G   VL  R  E+G   A +  + SG + VIF  LD+A  A++ + A    S   +LD+L++NAGI+                       +T E+    L+ N++G   +   L+P L+    +R+V VSS+
Sbjct:   37 RTVVVTGANSGIGKMTALELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEPRLDVLIHNAGISSCG--------------------RTRETFNLLLRVNHVGPFLLTHLLLPRLRSCAPSRVVIVSSA 171          
BLAST of FC932118 vs. ExPASy Swiss-Prot
Match: RDH11_HUMAN (Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 53/162 (32.72%), Postives = 77/162 (47.53%), Query Frame = 3
Query:   63 SSMAETAKRYAVVTGANKGIGYEVVRQLALNGVITVLTARD-EKGGLEAVEKLKHSGFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGITGISSDADTLSGFIEEGVARGKMTQTYESAEKCLQTNYLGAKRMCEALIPLLQLSDSARIVNVSS 545
            +S  +   +  VVTGAN GIG E  ++LA  G    L  RD EKG L A E    +G   V+  +LD++D  +I + A    +    L +L+NNAG+  +   + T  GF                 E  +  N+LG   +   L+  L+ S  +RIVNVSS
Sbjct:   34 TSTVQLPGKVVVVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEKHLHVLINNAGVM-MCPYSKTADGF-----------------EMHIGVNHLGHFLLTHLLLEKLKESAPSRIVNVSS 177          
BLAST of FC932118 vs. ExPASy Swiss-Prot
Match: FABG_BUCBP (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fabG PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 3
Query:   75 ETAKRYAVVTGANKGIGYEVVRQLALNGVITVLTARDEKGGLEAVEK-LKHSGFDNVIFHQLDVADPAAIHSVADFIRSHFGKLDILVNNAGI 350
            +T K+ AV+TGAN+G+G  +  +L+    ITV+     + G + + K LK++G    I  +LD+ +P  I    DF+  +FG++DIL+NNAGI
Sbjct:    2 KTTKKIAVITGANRGLGKGIAEELSNTNNITVIGTSTSQKGCKIINKYLKNNG----IGIKLDITNPNEITKTMDFVYKNFGRVDILINNAGI 90          
The following BLAST results are available for this feature:
BLAST of FC932118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
DRS7B_BOVIN1.195e-1129.53Dehydrogenase/reductase SDR family member 7B OS=Bo... [more]
Y0419_STAS12.038e-1130.86Uncharacterized oxidoreductase SSP0419 OS=Staphylo... [more]
AYR1_YEAST2.661e-1129.32NADPH-dependent 1-acyldihydroxyacetone phosphate r... [more]
FABG_SALTY4.539e-1131.013-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
FABG_SALTI4.539e-1131.013-oxoacyl-[acyl-carrier-protein] reductase OS=Salm... [more]
DHR13_MOUSE4.539e-1132.26Dehydrogenase/reductase SDR family member 13 OS=Mu... [more]
RDH11_HUMAN7.743e-1132.72Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 ... [more]
FABG_BUCBP7.743e-1138.713-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]

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Properties
Property NameValue
Genbank descriptionC34204H01EF PostHarveN Citrus clementina cDNA clone C34204H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932118 ID=FC932118; Name=FC932118; organism=Citrus clementina; type=EST; length=671bp
TCCTTTGAGTTCTCCCTTCCAATATGTGATGTCTAGGACTCTCGGTTGTG
CTCCACACTTCGTCCTCAATGGCAGAAACAGCTAAGAGGTATGCAGTTGT
TACAGGAGCAAATAAGGGAATTGGGTATGAAGTAGTGAGGCAATTGGCTT
TAAATGGGGTCATTACGGTACTAACAGCCAGAGATGAGAAGGGGGGTCTT
GAAGCTGTTGAAAAACTCAAACACTCTGGCTTTGATAATGTGATCTTTCA
TCAGCTTGATGTTGCAGACCCTGCTGCTATTCACTCTGTAGCTGATTTCA
TTCGAAGTCATTTTGGAAAGCTTGATATTTTGGTAAATAATGCAGGGATT
ACTGGAATCAGTTCGGATGCTGATACTTTGTCAGGTTTTATTGAGGAAGG
TGTTGCAAGAGGAAAAATGACTCAAACTTATGAGTCAGCTGAAAAGTGCC
TGCAAACAAACTACTTGGGGGCCAAAAGAATGTGTGAAGCACTCATTCCT
CTCCTCCAGTTATCCGATTCAGCAAGAATTGTTAATGTATCCTCTTCCTT
GGGAAAGTTGATGTATGTAACACATGAATGGGCCAAAGGAGTGTTTAGTG
ATGCTGAGAACCTCACAGAAGAAAGAGTGGATGAGGTATTGAGCCAGTAT
CTAAATGATTACNAAGAGGGT
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