FC932122

Overview
NameFC932122
Unique NameFC932122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAW (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MW2) GN=gnd PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.829e-39
Identity = 82/180 (45.56%), Postives = 120/180 (66.67%), Query Frame = 3 
Query:   30 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            +IG+ GLAVMG+NLA N+  +G+ +SV+NR++ K D  ++ +  +   P    Y+  +FV S+++PR ++++V+AG   D TI +L   +  GD +IDGGN  Y +T RR    +Q  + ++GMGVSGGE GA  GPSLMPGG  EAYN + DIL  +AA+  DG  CVTYIG  G+G++
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPT---YSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY 180
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAS (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MSSA476) GN=gnd PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.829e-39
Identity = 82/180 (45.56%), Postives = 120/180 (66.67%), Query Frame = 3 
Query:   30 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            +IG+ GLAVMG+NLA N+  +G+ +SV+NR++ K D  ++ +  +   P    Y+  +FV S+++PR ++++V+AG   D TI +L   +  GD +IDGGN  Y +T RR    +Q  + ++GMGVSGGE GA  GPSLMPGG  EAYN + DIL  +AA+  DG  CVTYIG  G+G++
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPT---YSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY 180
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAR (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MRSA252) GN=gnd PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.829e-39
Identity = 82/180 (45.56%), Postives = 120/180 (66.67%), Query Frame = 3 
Query:   30 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            +IG+ GLAVMG+NLA N+  +G+ +SV+NR++ K D  ++ +  +   P    Y+  +FV S+++PR ++++V+AG   D TI +L   +  GD +IDGGN  Y +T RR    +Q  + ++GMGVSGGE GA  GPSLMPGG  EAYN + DIL  +AA+  DG  CVTYIG  G+G++
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPT---YSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY 180
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain N315) GN=gnd PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.829e-39
Identity = 82/180 (45.56%), Postives = 120/180 (66.67%), Query Frame = 3 
Query:   30 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            +IG+ GLAVMG+NLA N+  +G+ +SV+NR++ K D  ++ +  +   P    Y+  +FV S+++PR ++++V+AG   D TI +L   +  GD +IDGGN  Y +T RR    +Q  + ++GMGVSGGE GA  GPSLMPGG  EAYN + DIL  +AA+  DG  CVTYIG  G+G++
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPT---YSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY 180
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain COL) GN=gnd PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.829e-39
Identity = 82/180 (45.56%), Postives = 120/180 (66.67%), Query Frame = 3 
Query:   30 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            +IG+ GLAVMG+NLA N+  +G+ +SV+NR++ K D  ++ +  +   P    Y+  +FV S+++PR ++++V+AG   D TI +L   +  GD +IDGGN  Y +T RR    +Q  + ++GMGVSGGE GA  GPSLMPGG  EAYN + DIL  +AA+  DG  CVTYIG  G+G++
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPT---YSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY 180
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAM (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gnd PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.302e-39
Identity = 82/180 (45.56%), Postives = 119/180 (66.11%), Query Frame = 3 
Query:   30 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            +IG+ GLAVMG+NLA N+   G+ +SV+NR++ K D  ++ +  +   P    Y+  +FV S+++PR ++++V+AG   D TI +L   +  GD +IDGGN  Y +T RR    +Q  + ++GMGVSGGE GA  GPSLMPGG  EAYN + DIL  +AA+  DG  CVTYIG  G+G++
Sbjct:    4 QIGVIGLAVMGKNLAWNIESHGYSVSVFNRSSEKTDLMVEESKGKNIHPT---YSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAGHY 180
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_LACLA (6-phosphogluconate dehydrogenase, decarboxylating OS=Lactococcus lactis subsp. lactis GN=gnd PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.302e-39
Identity = 81/184 (44.02%), Postives = 125/184 (67.93%), Query Frame = 3 
Query:   21 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV--DDGPCVTYIGEGGSGNF 566
            A +  G+ G+AVMG+NLALNV  +G+ +++YNRTTSK +E   + H++  L LT   T  +FV S+++PR ++++V+AG+  D TI +L   +  GD +IDGGN  + +T RR  E +  G+ ++G GVSGGE+GA  GPS+MPGG  EAY+ +  I +++AA+   D  PCV Y+G  G+G++
Sbjct:    2 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVY-KEHQDKNLVLTK--TLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDKGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHY 182
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.230e-39
Identity = 82/180 (45.56%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:   30 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            +IG+ GLAVMG+NLA N+  +G+ +SVYNR+  K DE +  +      P    Y+  +FV S+++PR ++++VKAG   D TI  L   +   D +IDGGN  Y +T RR    ++  + ++GMGVSGGE GA  GPSLMPGG  +AYN + DIL  +AA+  DG  CVTYIG  G+G++
Sbjct:    4 QIGVVGLAVMGKNLAWNIESRGYSVSVYNRSRQKTDEMVKESPGREIYPT---YSLEEFVESLEKPRKILLMVKAGPATDATIDGLLPLLDDDDILIDGGNTNYQDTIRRNKALAESSINFIGMGVSGGEIGALTGPSLMPGGQKDAYNKVSDILDAIAAKAQDGASCVTYIGPNGAGHY 180
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_STAEQ (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gnd PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.230e-39
Identity = 82/180 (45.56%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:   30 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            +IG+ GLAVMG+NLA N+  +G+ +SVYNR+  K DE +  +      P    Y+  +FV S+++PR ++++VKAG   D TI  L   +   D +IDGGN  Y +T RR    ++  + ++GMGVSGGE GA  GPSLMPGG  +AYN + DIL  +AA+  DG  CVTYIG  G+G++
Sbjct:    4 QIGVVGLAVMGKNLAWNIESRGYSVSVYNRSRQKTDEMVKESPGREIYPT---YSLEEFVESLEKPRKILLMVKAGPATDATIDGLLPLLDDDDILIDGGNTNYQDTIRRNKALAESSINFIGMGVSGGEIGALTGPSLMPGGQKDAYNKVSDILDAIAAKAQDGASCVTYIGPNGAGHY 180
[Close]
BLAST of FC932122 vs. ExPASy Swiss-Prot
Match: 6PGD_TREPA (6-phosphogluconate dehydrogenase, decarboxylating OS=Treponema pallidum GN=gnd PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.075e-38
Identity = 83/180 (46.11%), Postives = 117/180 (65.00%), Query Frame = 3 
Query:   33 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETL-DRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 566
            IG  GLAVMG+NL LN+   GF ++V+NRTT+ VD  L  RAH +    +TG ++  + V  + RPR ++++VKAGS VD  I  +   +  GD +IDGGN  Y +T RR+H     G+ ++G GVSGGEEGA  GPSLMPGGS +A+  +  I   +AA+ DDG PC  ++G  G+G++
Sbjct:    5 IGFIGLAVMGENLVLNIERNGFSVAVFNRTTTVVDRFLAGRAHGKR---ITGAHSIAELVSLLARPRKIMLMVKAGSAVDAVIDQILPLLEKGDLVIDGGNSHYQDTIRRMHALEAAGIHFIGTGVSGGEEGALRGPSLMPGGSAQAWPLVSPIFCAIAAKADDGTPCCDWVGSDGAGHY 181
The following BLAST results are available for this feature:
BLAST of FC932122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_STAAW2.829e-3945.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAS2.829e-3945.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAR2.829e-3945.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAN2.829e-3945.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAC2.829e-3945.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAM6.302e-3945.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_LACLA6.302e-3944.026-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAES8.230e-3945.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAEQ8.230e-3945.566-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_TREPA1.075e-3846.116-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionC34204H05EF PostHarveN Citrus clementina cDNA clone C34204H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932122 ID=FC932122; Name=FC932122; organism=Citrus clementina; type=EST; length=568bp
CAGTTTCAATGGAAGCCCCTGCTCTCTCACGCATCGGTCTTGCTGGCCTA
GCCGTCATGGGCCAGAACCTGGCCCTAAACGTCGCTGAAAAAGGCTTCCC
AATCTCCGTCTACAACCGCACTACTTCCAAAGTCGACGAAACCCTAGATC
GGGCCCACCGCGAGGGTCAACTCCCTTTGACCGGCCACTACACTCCCAGG
GACTTCGTCCTCTCCATCCAACGCCCCAGATCCGTCATCATCTTAGTCAA
AGCCGGCTCCCCCGTTGACCAGACCATCGCCGCCCTCTCGGAGCACATGT
CCCCCGGCGACTGCATCATCGACGGCGGCAACGAGTGGTACCTCAACACC
GAGCGCCGTATCCATGAAGCCAGCCAGCAGGGTTTGCTTTATCTCGGCAT
GGGGGTCTCCGGCGGCGAGGAAGGCGCGCGTCATGGTCCCTCTTTGATGC
CCGGTGGCTCCTTCGAGGCTTATAATAATATTCGAGATATTTTGCAAAAA
GTTGCCGCCCAAGTTGATGATGGCCCTTGTGTTACTTACATTGGTGAAGG
CGGGTCTGGTAATTTCGT
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