FC932125

Overview
NameFC932125
Unique NameFC932125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: ISP5_SCHPO (Sexual differentiation process putative amino-acid permease isp5 OS=Schizosaccharomyces pombe GN=isp5 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 65/197 (32.99%), Postives = 105/197 (53.30%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVG 592
            ASE+ +P +A PKA ++V  R++ FYIL   ++ +++  R   L + S  A +SPF++A+ +A I  LP ++NA ILI+  +A N   + GSR + +M      P+ F  V++ G P +A +A                +   F WLL++S +A L  W ++ V YI +  A KKQ  S +   + +PF  Y A  G
Sbjct:  293 ASETKNPAKAFPKAVKQVFIRVSLFYILALFVVSLLISGRDERLTTLSATA-ASPFILALMDAKIRGLPHVLNAVILISVLTAANGITYTGSRTLHSMAEQGHAPKWFKYVDREGRPLLA-MAFVLCFGALGYICESAQSDTVFDWLLSISNLATLFVWLSINVSYIIYRLAFKKQGKSYDEVGYHSPFGIYGACYG 487          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: GNP1_YEAST (High-affinity glutamine permease OS=Saccharomyces cerevisiae GN=GNP1 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 64/233 (27.47%), Postives = 118/233 (50.64%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNAN-SSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLVAGF-----PVFLKGNWSTSNFVASY 682
            ASE  +P +AIP AA+++ YRI F ++    L+G +V   +  L+  +G+A  +SP+VIA+++  +  +P  +NA IL++  S  N   +  SR+++++      P+ F  +++ G P  A++ +                   FTWLL +S ++ L  W T+C+ +IRF  A+K Q  S     +K+    + +    +   ++ L+A F     P+   G  S  +F  +Y
Sbjct:  365 ASEQSNPRKAIPSAAKKMIYRILFVFLASLTLVGFLVPYTSDQLLGAAGSATKASPYVIAVSSHGVRVVPHFINAVILLSVLSVANGAFYTSSRILMSLAKQGNAPKCFDYIDREGRPAAAMLVS-ALFGVIAFCASSKKEEDVFTWLLAISGLSQLFTWITICLSHIRFRRAMKVQGRSLGEVGYKSQVGVWGSAYAVL-MMVLALIAQFWVAIAPIGGGGKLSAQSFFENY 595          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AAP1_SCHPO (Amino-acid permease 1 OS=Schizosaccharomyces pombe GN=aap1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 65/216 (30.09%), Postives = 104/216 (48.15%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVG----FIGSTIITLVAGFPV 637
            A  + +P RAIP A ++V YR+ FFYI+   LI ++V      L       N SPF+IAI N  I+ LP I NA IL++  S GN+  +  SR  +A+      P+  GRV++ G P ++ + +                +  F WL+++S     + W    + +IR   A+K Q +     P+K P   Y ++ G    F+    +  ++ FPV
Sbjct:  280 AGNTSNPQRAIPSAVKKVFYRMGFFYIITIFLITLVVPYDNPDL------GNVSPFIIAIKNGGIHVLPHITNAVILVSVLSVGNAAVFAASRNAMALVKQGWAPRFLGRVDQKGRPVISYLCS-LAMACIAYVNAAPDGSVVFDWLMSVSGGGAFVIWGLSFIDHIRLRYAMKAQKIPDTVLPYKFPGSVYLSYYGVLINFLALCALVYISIFPV 488          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: SSY1_YEAST (SPS-sensor component SSY1 OS=Saccharomyces cerevisiae GN=SSY1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 73/267 (27.34%), Postives = 120/267 (44.94%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIV---DPRATGLVSGS---------------------------------GNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALK--KQNVSR--ETFPWKAPFQPYAAWVGFIGSTIITLVAGFPVFLKGNWSTSNFVASY 682
            + E+++P + IP A +R    +   Y+     +G+ +   DPR      G                                  G   SSP+V+A+ N  +    S  NA ++    +AG S  +  SR + AM+   + P +F   +K GVPYV+V+ +               A + F  L N+S+ +  I W  L + ++RFY ALK  K  +SR   ++P+K+PFQPY A  G +G ++  +  G+P F+   WST  F ++Y
Sbjct:  524 SGEAINPRKTIPSATKRTFSIVLISYVFLIFSVGINIYSGDPRLLSYFPGISEKRYEAIIKGTGMDWRLRTNCRGGIDYRQISVGTGYSSPWVVALQNFGLCTFASAFNAILIFFTATAGISSLFSCSRTLYAMSVQRKAPPVFEICSKRGVPYVSVIFS-SLFSVIAYIAVDQTAIENFDVLANVSSASTSIIWMGLNLSFLRFYYALKQRKDIISRNDSSYPYKSPFQPYLAIYGLVGCSLFVIFMGYPNFIHHFWSTKAFFSAY 789          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: VAL1_YEAST (Valine/tyrosine/tryptophan amino-acid permease OS=Saccharomyces cerevisiae GN=VAP1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 67/234 (28.63%), Postives = 116/234 (49.57%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLV--SGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLVAGF-----PVFLKGNWSTSNFVASY 682
            A+E  +P ++IP A ++V YRI   Y+L  +L+  +V   +  L+  S S  +++SPFVIA+ +  +  +P  +NA ILI+  S  NS  + G R+++++     LP+    V+++G P +    +                 Q FTWLL +S+++ L  W ++ + +IRF  A+ KQ  S     +KA    + +W+  +   I  LV  F     PV   G  +   F  +Y
Sbjct:  304 AAEQENPTKSIPNACKKVVYRILLIYMLTTILVCFLVPYNSDELLGSSDSSGSHASPFVIAVASHGVKVVPHFINAVILISVISVANSSLYSGPRLLLSLAEQGVLPKCLAYVDRNGRPLLCFFVS-LVFGCIGFVATSDAEEQVFTWLLAISSLSQLFIWMSMSLSHIRFRDAMAKQGRSMNEVGYKAQTGYWGSWLAVL-IAIFFLVCQFWVAIAPVNEHGKLNVKVFFQNY 535          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: TAT2_YEAST (Tryptophan permease OS=Saccharomyces cerevisiae GN=TAT2 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 68/207 (32.85%), Postives = 107/207 (51.69%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLV 622
            AS   DP + +P A ++V +RI FF+++   L+G +V      L+ GS + ++SPFVIAI    I ALPSIVNA ILI+  S GNS  +  SR + +M     +P  FG +++ G P V ++A                 ++ F WL+ ++ +A  I W ++ + +IRF  A+K Q  S +          + + VG  GS    L+
Sbjct:  291 ASGETDP-KGLPSAIKQVFWRILFFFLISLTLVGFLVPYTNQNLLGGS-SVDNSPFVIAIKLHHIKALPSIVNAVILISVLSVGNSCIFASSRTLCSMAHQGLIPWWFGYIDRAGRPLVGIMAN-SLFGLLAFLVKSGSMSEVFNWLMAIAGLATCIVWLSINLSHIRFRLAMKAQGKSLDEL-------EFVSAVGIWGSAYSALI 487          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AGP1_SACBA (General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 55/179 (30.73%), Postives = 95/179 (53.07%), Query Frame = 2
Query:    5 SESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNAN-SSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVS 538
            +E  +P +AIP AA+++ YRI F ++   +++G +V   +  L+  SG    +SP+VIAI +  +   P  VNA IL++  S  NS  +  +R+ + ++     P+IF  +++ G P +A+  +                 Q FTWLL +S ++ L  W  +C+ +IRF  A+K Q  S
Sbjct:  337 AEQSNPRKAIPGAAKQMIYRILFLFLATIIIVGFLVPYNSDQLLGSSGGGTKASPYVIAIASHGVRVAPHFVNAVILLSVLSMANSSFYSSARLFLTLSEQGYAPKIFSYIDRAGRPLIAMCVS-ALFAVIAFCAASPKEDQVFTWLLAISGLSQLFTWTAICLSHIRFRRAMKVQGRS 514          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: INDA1_TRIAT (Amino-acid permease inda1 OS=Trichoderma atroviride GN=inda1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 63/212 (29.72%), Postives = 105/212 (49.53%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANS--SPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLVAGF 631
            A+ES +P + +P A ++V +RI  FYILG   +G++++     L+S +  A+S  SPFV+    A +      +N  IL +  S G S  + GSR + A+      P++F  ++K G P  +V+                     F WLL +S +A L  W ++C+ +IRF  A K    + +  P+KA    Y +++G     +I L+A F
Sbjct:  279 AAESTNPTKNMPGAIKQVFWRITIFYILGLFFVGLLINSDDPALLSSAAYADSKASPFVLVGKYAGLKGFDHFMNLVILASVLSIGVSGVYGGSRTLTALAQQGYAPKLFTYIDKSGRPLPSVIFL-ILFGFIAYVSLDATGPVVFDWLLAISGLAALFTWGSVCLAHIRFRKAWKYHGHTLDEIPFKAAGGVYGSYLGLF-ICVIVLMAQF 488          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AGP1_YEAST (General amino acid permease AGP1 OS=Saccharomyces cerevisiae GN=AGP1 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 52/179 (29.05%), Postives = 96/179 (53.63%), Query Frame = 2
Query:    5 SESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLV-SGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVS 538
            +E  +P +AIP AA+++ YRI F ++   +L+G +V   +  L+ S  G   +SP+VIA+ +  +  +P  +NA IL++  S  NS  +  +R+ + ++     P++F  +++ G P +A+  +                 Q FTWLL +S ++ L  W  +C+ ++RF  A+K Q  S
Sbjct:  337 AEQSNPRKAIPGAAKQMIYRILFLFLATIILLGFLVPYNSDQLLGSTGGGTKASPYVIAVASHGVRVVPHFINAVILLSVLSMANSSFYSSARLFLTLSEQGYAPKVFSYIDRAGRPLIAMGVS-ALFAVIAFCAASPKEEQVFTWLLAISGLSQLFTWTAICLSHLRFRRAMKVQGRS 514          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AGP1_YEAS7 (General amino acid permease AGP1 OS=Saccharomyces cerevisiae (strain YJM789) GN=AGP1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 52/179 (29.05%), Postives = 96/179 (53.63%), Query Frame = 2
Query:    5 SESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLV-SGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVS 538
            +E  +P +AIP AA+++ YRI F ++   +L+G +V   +  L+ S  G   +SP+VIA+ +  +  +P  +NA IL++  S  NS  +  +R+ + ++     P++F  +++ G P +A+  +                 Q FTWLL +S ++ L  W  +C+ ++RF  A+K Q  S
Sbjct:  337 AEQSNPRKAIPGAAKQMIYRILFLFLATIILLGFLVPYNSDQLLGSTGGGTKASPYVIAVASHGVRVVPHFINAVILLSVLSMANSSFYSSARLFLTLSEQGYAPKVFSYIDRAGRPLIAMGVS-ALFAVIAFCAASPKEEQVFTWLLAISGLSQLFTWTAICLSHLRFRRAMKVQGRS 514          
The following BLAST results are available for this feature:
BLAST of FC932125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ISP5_SCHPO6.910e-2432.99Sexual differentiation process putative amino-acid... [more]
GNP1_YEAST5.850e-2327.47High-affinity glutamine permease OS=Saccharomyces ... [more]
AAP1_SCHPO7.640e-2330.09Amino-acid permease 1 OS=Schizosaccharomyces pombe... [more]
SSY1_YEAST1.702e-2227.34SPS-sensor component SSY1 OS=Saccharomyces cerevis... [more]
VAL1_YEAST8.447e-2228.63Valine/tyrosine/tryptophan amino-acid permease OS=... [more]
TAT2_YEAST8.447e-2232.85Tryptophan permease OS=Saccharomyces cerevisiae GN... [more]
AGP1_SACBA4.192e-2130.73General amino acid permease AGP1 OS=Saccharomyces ... [more]
INDA1_TRIAT1.593e-2029.72Amino-acid permease inda1 OS=Trichoderma atrovirid... [more]
AGP1_YEAST1.593e-2029.05General amino acid permease AGP1 OS=Saccharomyces ... [more]
AGP1_YEAS71.593e-2029.05General amino acid permease AGP1 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC34204H08EF PostHarveN Citrus clementina cDNA clone C34204H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932125 ID=FC932125; Name=FC932125; organism=Citrus clementina; type=EST; length=718bp
CGCATCTGAGTCGGTTGATCCTCATCGTGCTATTCCCAAAGCCGCCCGTC
GTGTGACTTACCGCATTGCCTTCTTCTACATTCTCGGAGCACTTCTCATC
GGCATGATCGTGGACCCAAGAGCCACAGGCCTGGTCTCCGGCTCTGGCAA
CGCGAACAGCTCGCCCTTTGTGATTGCCATCACCAACGCCAGCATCAACG
CTCTGCCCTCGATCGTGAATGCATGCATTCTCATTGCCGCGTGGTCTGCC
GGTAACTCATACTGCTGGGTCGGATCACGCATGATTGTCGCCATGACTAC
AGACCACCAGCTGCCCCAGATCTTCGGCCGCGTAAACAAGCACGGTGTGC
CATATGTGGCTGTCGTCGCCGCCTGGCTCTTTGGGCCGCTGCCGTACCTG
AGTCTCGGTAGCGGTGGCGCAGCGCAGGCATTCACCTGGCTTCTGAACCT
CAGCACGGTTGCCGGTCTGATCGCTTGGGCAACCCTTTGCGTCTGCTACA
TTCGTTTCTATGCCGCATTGAAGAAGCAAAATGTGAGCCGAGAAACTTTC
CCATGGAAAGCACCCTTTCAACCTTATGCCGCATGGGTAGGCTTTATCGG
CTCTACTATCATTACTTTGGTTGCTGGTTTCCCCGTGTTTTTGAAGGGCA
ACTGGAGTACGTCCAACTTCGTTGCATCGTACATCGGTATCCCCATCTTC
ATCGNTCCCATCATTTGC
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