FC932125

Overview
NameFC932125
Unique NameFC932125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: YQD2_SCHPO (Probable amino-acid permease PB1C11.02 OS=Schizosaccharomyces pombe GN=SPCPB1C11.02 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 66/218 (30.28%), Postives = 104/218 (47.71%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQ-NVSRETFP-WKAPFQPYAAWVGFIGSTIITLVAGFPVFLKG 649
            A E+  P   +PKA R   +R+   YI+  L++G+ +     GL   S     SPF        +    SI+N  IL +A SAGN   + G+R++ ++      P++F + NKHG+P+++V+A                A + + +LLN+  V+  I+W  + V  +RF  AL+ Q    R  FP W  P  PY          II L+ G  +FL+G
Sbjct:  245 AGEAKSPITTLPKAIRFTAHRVLLLYIISVLVVGINLPYNTPGLDGDS--VRMSPFTFVFKKFGVPGAASIMNLVILSSALSAGNHSLYAGTRLLYSLAKSGHAPKVFSKCNKHGIPWLSVLAT---SATAILCLMSSQAGKTWGFLLNVIAVSNQISWIFIAVSSLRFRKALRVQGKTHRLYFPNWTYPVGPY----------IIILLNGVFLFLQG 447          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: BAP3_YEAST (Valine amino-acid permease OS=Saccharomyces cerevisiae GN=BAP3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 63/231 (27.27%), Postives = 110/231 (47.62%), Query Frame = 2
Query:    5 SESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNA-NSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITL----VAGFPVFLKGNWSTSNFVASY 682
            +E  +P ++ P AA+R  YRI   Y+L  +LIG  V      L+   G+A ++SP+V+A +   +  +P I+NA ILI+  S  NS  +   R++ ++      P+    +++ G P  A+V                   QAFTWL  ++ ++ L  W+ + + +IRF  A+K Q  S +   +KA    + ++ G   + ++ +    VA  P+   G      F  SY
Sbjct:  307 NEQSNPRKSTPVAAKRSVYRILIIYLLTMILIGFNVPHNNDQLMGSGGSATHASPYVLAASIHKVRVIPHIINAVILISVISVANSALYAAPRLMCSLAQQGYAPKFLNYIDREGRPLRALVVC-SLVGVVGFVACSPQEEQAFTWLAAIAGLSELFTWSGIMLSHIRFRKAMKVQGRSLDEVGYKANTGIWGSYYGVFFNMLVFMAQFWVALSPIGNGGKCDAQAFFESY 536          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: MMP1_YEAST (S-methylmethionine permease 1 OS=Saccharomyces cerevisiae GN=MMP1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 59/201 (29.35%), Postives = 101/201 (50.25%), Query Frame = 2
Query:   29 AIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNAN--SSPFVIAITNASI--NALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITL 619
            ++ +AA+   +RI  FYI+  ++IG +V      L+SGS + +  +SPFVIA++N       +   +NA ILIA +S  NS  +  SR+I  + T  QLP+I   ++++G P V + A                    FTWL  L +++    W  +C C +RF  A+K Q  S++   +++    Y    G I + ++ +
Sbjct:  292 SVSRAAKGTFWRIIIFYIVTVIIIGCLVPYNDPRLISGSSSEDITASPFVIALSNTGAMGTRVSHFMNAVILIAVFSVCNSCVYASSRLIQGLATAGQLPKICAYMDRNGRPLVGM-AICGAFGLLGFLVVSKNQGTVFTWLFALCSISFFTTWFCICFCQVRFRMAMKAQGRSKDDIIYRSTLGIYGGIFGCILNVLLVI 491          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AGP3_YEAST (General amino acid permease AGP3 OS=Saccharomyces cerevisiae GN=AGP3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 66/227 (29.07%), Postives = 106/227 (46.70%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLVAGFPVFLKGNWSTSNFVASY 682
            A+ES +P +A+P A R+  +RI   YI  A+  G  V P     +S S     SP  IAI+ A       +VNA ILI   SA N   ++GSR +  +  +   P+I    ++ GVP +  +  +              AA A+++++NLS V   I W  +   ++R   A   Q  S E  P++A F P+   +    +  + L+ G+  F+   +   NFV +Y
Sbjct:  263 ATESKNPGKAVPLAVRQTLWRILVVYIGIAVFYGATV-PFDDPNLSASTKVLKSPIAIAISRAGWAGGAHLVNAFILITCISAINGSLYIGSRTLTHLAHEGLAPKILAWTDRRGVP-IPAITVFNALGLISLMNVSVGAANAYSYIVNLSGVGVFIVWGVISYTHLRIRKAWVAQGRSIEELPYEALFYPWTPVLSLAANIFLALIQGWSYFVP--FDAGNFVDAY 485          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: SAM3_YEAST (S-adenosylmethionine permease SAM3 OS=Saccharomyces cerevisiae GN=SAM3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 64/204 (31.37%), Postives = 104/204 (50.98%), Query Frame = 2
Query:   29 AIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGN--ANSSPFVIAITNA-SINA-LPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLVAG 628
            AI +AA+   +RIA FYI   ++IG +V      L+SGS +   ++SPFVIA++N  S+ A + + +N  IL+A  S  NS  +  SR+I A+    QLP +   +++ G P V +  +                 + FTWL  L +++    W  +C+  IRF  ALK Q  S +   +K+    Y   +G + + +  L+AG
Sbjct:  296 AISRAAKGTFWRIAIFYITTVVIIGCLVPYNDPRLLSGSNSEDVSASPFVIALSNTGSMGAKVSNFMNVVILVAVVSVCNSCVYASSRLIQALGASGQLPSVCSYMDRKGRPLVGIGIS-GAFGLLGFLVASKKEDEVFTWLFALCSISSFFTWFCICMSQIRFRMALKAQGRSNDEIAYKSILGVYGGILGCVLNAL--LIAG 496          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: PHEP_ECOLI (Phenylalanine-specific permease OS=Escherichia coli (strain K12) GN=pheP PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 63/208 (30.29%), Postives = 108/208 (51.92%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAW--VGFIGSTIITL 619
            A+E+ DP ++IPKA  +V YRI  FYI G+L++ + + P           +NSSPFV+   N   N + S +N  IL+A+ S  NS  +  SRM+  ++     P+   RV++ GVP  +++ +                 +AF  L+ L     L+ W  +C+ ++RF AA+++Q   RET  +KA   P+  +  + F+G  ++ +
Sbjct:  232 AAEARDPEKSIPKAVNQVVYRILLFYI-GSLVVLLALYPWV------EVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLS-GAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQ--GRET-QFKALLYPFGNYLCIAFLGMILLLM 428          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: BAP2_YEAST (Leu/Val/Ile amino-acid permease OS=Saccharomyces cerevisiae GN=BAP2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 61/213 (28.64%), Postives = 103/213 (48.36%), Query Frame = 2
Query:    8 ESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNA-NSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLVAGFPVFL 643
            E  +P ++ P AA+R  YRI   Y+L  +LIG  V      L+   G+A ++SP+V+A +   +  +P I+NA ILI+  S  NS  + G R+I ++      P+    V++ G P  A++                     FTWL  ++ ++ L  W ++ + ++RF  A+K Q  S +   +KA    + +  G +   I+  VA F V L
Sbjct:  313 EQSNPRKSTPVAAKRSIYRIVVIYLLTMILIGFNVPYNDDQLMGAGGSATHASPYVLAASIHGVKIVPHIINAVILISVVSVANSSLYAGPRLICSLAQQGYAPKFLDYVDREGRPLRALIVCCVFGVIAFVAASSKEEI-VFTWLAAIAGLSELFTWTSIMLSHLRFRQAMKVQGRSLDELGYKATTGIWGSIYG-VFFNILVFVAQFWVAL 523          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: ANSP1_MYCTU (L-asparagine permease 1 OS=Mycobacterium tuberculosis GN=ansP1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 54/226 (23.89%), Postives = 103/226 (45.58%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVG--FIGSTIITLVAGFPVFLKGNWSTSNFV 673
            A E+ +P + +P+A   V  RIA FY+    L+ +++   A         A  SPFV   +    +    ++N  +L AA S+ N+  +   R++ ++      P+   R++K GVPY  +V                   +AF  +LN+S +  +  WAT+ +C +R +       + R  F  + PF PY+ ++   F+   ++T+ +  P+   G W+ +  +
Sbjct:  234 AGETAEPEKIMPRAINSVVARIAIFYVGSVALLALLLPYTAY-------KAGESPFVTFFSKIGFHGAGDLMNIVVLTAALSSLNAGLYSTGRVMHSIAMSGSAPRFTARMSKSGVPYGGIVLT-AVITLFGVALNAFKPGEAFEIVLNMSALGIIAGWATIVLCQLRLHKLANAGIMQRPRF--RMPFSPYSGYLTLLFLLVVLVTMASDKPI---GTWTVATLI 446          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: ANSP1_MYCBO (L-asparagine permease 1 OS=Mycobacterium bovis GN=ansP1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 54/226 (23.89%), Postives = 103/226 (45.58%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVG--FIGSTIITLVAGFPVFLKGNWSTSNFV 673
            A E+ +P + +P+A   V  RIA FY+    L+ +++   A         A  SPFV   +    +    ++N  +L AA S+ N+  +   R++ ++      P+   R++K GVPY  +V                   +AF  +LN+S +  +  WAT+ +C +R +       + R  F  + PF PY+ ++   F+   ++T+ +  P+   G W+ +  +
Sbjct:  234 AGETAEPEKIMPRAINSVVARIAIFYVGSVALLALLLPYTAY-------KAGESPFVTFFSKIGFHGAGDLMNIVVLTAALSSLNAGLYSTGRVMHSIAMSGSAPRFTARMSKSGVPYGGIVLT-AVITLFGVALNAFKPGEAFEIVLNMSALGIIAGWATIVLCQLRLHKLANAGIMQRPRF--RMPFSPYSGYLTLLFLLVVLVTMASDKPI---GTWTVATLI 446          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: ANSP_SALTY (L-asparagine permease OS=Salmonella typhimurium GN=ansP PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 53/213 (24.88%), Postives = 102/213 (47.89%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVG--FIGSTIITLVAGFP 634
            A E  DP + +PKA   V +RI  FY+   +L+ +++   A         A  SPFV   +   +  + SI+N  +L AA S+ NS  +   R++ +M+     P+   ++++  VPY  ++A                 ++ F  +LN +++  + +WA + VC +R   A+K+   +  +F  K P  P+ +W+   F+ S ++ +   +P
Sbjct:  243 AGECKDPQKMVPKAINSVIWRIGLFYVGSVVLLVLLLPWNAY-------QAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMSMGGSAPKFMAKMSRQHVPYAGILAT-LVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIMVCQMRLRQAIKEGKAADVSF--KLPGAPFTSWLTLLFLLSVLVLMAFDYP 445          
The following BLAST results are available for this feature:
BLAST of FC932125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
YQD2_SCHPO2.717e-2030.28Probable amino-acid permease PB1C11.02 OS=Schizosa... [more]
BAP3_YEAST3.004e-1927.27Valine amino-acid permease OS=Saccharomyces cerevi... [more]
MMP1_YEAST3.924e-1929.35S-methylmethionine permease 1 OS=Saccharomyces cer... [more]
AGP3_YEAST5.125e-1929.07General amino acid permease AGP3 OS=Saccharomyces ... [more]
SAM3_YEAST1.947e-1831.37S-adenosylmethionine permease SAM3 OS=Saccharomyce... [more]
PHEP_ECOLI1.947e-1830.29Phenylalanine-specific permease OS=Escherichia col... [more]
BAP2_YEAST7.400e-1828.64Leu/Val/Ile amino-acid permease OS=Saccharomyces c... [more]
ANSP1_MYCTU1.543e-1523.89L-asparagine permease 1 OS=Mycobacterium tuberculo... [more]
ANSP1_MYCBO1.543e-1523.89L-asparagine permease 1 OS=Mycobacterium bovis GN=... [more]
ANSP_SALTY2.015e-1524.88L-asparagine permease OS=Salmonella typhimurium GN... [more]

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Properties
Property NameValue
Genbank descriptionC34204H08EF PostHarveN Citrus clementina cDNA clone C34204H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932125 ID=FC932125; Name=FC932125; organism=Citrus clementina; type=EST; length=718bp
CGCATCTGAGTCGGTTGATCCTCATCGTGCTATTCCCAAAGCCGCCCGTC
GTGTGACTTACCGCATTGCCTTCTTCTACATTCTCGGAGCACTTCTCATC
GGCATGATCGTGGACCCAAGAGCCACAGGCCTGGTCTCCGGCTCTGGCAA
CGCGAACAGCTCGCCCTTTGTGATTGCCATCACCAACGCCAGCATCAACG
CTCTGCCCTCGATCGTGAATGCATGCATTCTCATTGCCGCGTGGTCTGCC
GGTAACTCATACTGCTGGGTCGGATCACGCATGATTGTCGCCATGACTAC
AGACCACCAGCTGCCCCAGATCTTCGGCCGCGTAAACAAGCACGGTGTGC
CATATGTGGCTGTCGTCGCCGCCTGGCTCTTTGGGCCGCTGCCGTACCTG
AGTCTCGGTAGCGGTGGCGCAGCGCAGGCATTCACCTGGCTTCTGAACCT
CAGCACGGTTGCCGGTCTGATCGCTTGGGCAACCCTTTGCGTCTGCTACA
TTCGTTTCTATGCCGCATTGAAGAAGCAAAATGTGAGCCGAGAAACTTTC
CCATGGAAAGCACCCTTTCAACCTTATGCCGCATGGGTAGGCTTTATCGG
CTCTACTATCATTACTTTGGTTGCTGGTTTCCCCGTGTTTTTGAAGGGCA
ACTGGAGTACGTCCAACTTCGTTGCATCGTACATCGGTATCCCCATCTTC
ATCGNTCCCATCATTTGC
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