FC932125

Overview
NameFC932125
Unique NameFC932125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: ANSP2_MYCBO (L-asparagine permease 2 OS=Mycobacterium bovis GN=ansP2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.488e-13
Identity = 50/208 (24.04%), Postives = 97/208 (46.63%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAW--VGFIGSTIITL 619
            A E+ +P + +P+A   V  RIA FY+   +L+ +++   A          + SPFV   +   I+A  S++N  +L AA S+ N+  +   R++ +M  +   P+    ++K GVPY  ++                  +QAF  +L+++    + AWAT+  C +R +       + R  F  + P  P++ +  + F+   +I +
Sbjct:  235 AGETAEPAKIMPRAINSVVLRIACFYVGSTVLLALLLPYTAY-------KEHVSPFVTFFSKIGIDAAGSVMNLVVLTAALSSLNAGLYSTGRILRSMAINGSGPRFTAPMSKTGVPYGGILLT-AGIGLLGIILNAIKPSQAFEIVLHIAATGVIAAWATIVACQLRLHRMANAGQLQRPKF--RMPLSPFSGYLTLAFLAGVLILM 432          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: YDGF_BACSU (Uncharacterized transporter ydgF OS=Bacillus subtilis GN=ydgF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 55/208 (26.44%), Postives = 96/208 (46.15%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAW--VGFIGSTIITL 619
            A E+ +P + IPKA   +  R+  FYI GALL+ M + P    ++    N + SPFV       I    SI+N  +L +A SA NS  +  SRM+ ++  DH  P+   ++ +  VP  A+  +                   FT + ++STV  +  W    +C++++    K +    +T  +K P  P+  +  + F+   ++ L
Sbjct:  230 AGETENPEKVIPKAINNIPVRVLLFYI-GALLVIMSIYP--WDII----NPSESPFVQVFVAVGIVGAASIINFVVLTSAASACNSAVFSTSRMVYSLAKDHNAPESMAKLTQRKVPRNALFFS-AIVILIGVTLNYIMPEGVFTLITSISTVCFIYIWGITVICHMKY---RKTRPELAKTNKFKLPLYPFTNYLILAFLAFVLVVL 426          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: MMUP_ECOLI (Probable S-methylmethionine permease OS=Escherichia coli (strain K12) GN=mmuP PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 50/199 (25.13%), Postives = 83/199 (41.71%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFI 598
            A E+ +P + IP A R    R+  F+I    ++  ++  +  G+         SPFV+      I     I N  IL A  SA NS  +   RM+ +++ +  LP  F RV K+GVP  A+  +                   F  L  +S  A +  W ++C  +  F     +Q  +     ++AP+ P    +GF+
Sbjct:  227 AGETENPRKVIPVAIRTTIARLIIFFIGTVFVLAALIPMQQVGV-------EKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNERTLPACFARVTKNGVPLTALSVSMLGGVLALFSSVVAPDT-VFVALSAISGFAVVAVWLSICASHFVFRRRHLQQGKALSELHYRAPWYPLVPVLGFV 417          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AROP_ECO57 (Aromatic amino acid transport protein aroP OS=Escherichia coli O157:H7 GN=aroP PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 57/208 (27.40%), Postives = 95/208 (45.67%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILG-ALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLV 622
            A+E+ +P ++IPKA  +V YRI  FYI   A+L+ ++   R T        A++SPFV+         + + +N  +L AA S  NS  +  SRM+  +      P+    V+K GVP V  +                    AF  L+ L   A +I WA + + +++F  A ++Q V    FP  A   P   W+  +   ++ ++
Sbjct:  224 AAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVT--------ADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVP-VNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTR-FP--ALLYPLGNWICLLFMAVVLVI 419          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: ANSP_STRCO (L-asparagine permease OS=Streptomyces coelicolor GN=ansP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 43/183 (23.50%), Postives = 89/183 (48.63%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETF 550
            A E+ +PH+ +P+A   + +R+A FY+   +L+ +++    + L SG    + SPFV  ++   + A   ++N  +L AA S+ NS  +   R++ +M      P+  G +++  VPY  ++                  ++AF  +LN++++  +  W  + +C++ F    +   V R  F
Sbjct:  247 AGETAEPHKIVPRAVNSIMWRVALFYVGSVVLLALLL---PSSLYSG----DESPFVTVLSGIGVPAAGDVMNLVVLTAAMSSLNSGLYSTGRILRSMAMAGSAPRFTGVMSRSQVPYGGILLT-CAVCVLGVGLNYLVPSKAFEIVLNVASLGIISTWVIIMICHLVFVRRARAGLVERPGF 421          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: YVBW_BACSU (Uncharacterized amino acid permease yvbW OS=Bacillus subtilis GN=yvbW PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 51/205 (24.88%), Postives = 88/205 (42.93%), Query Frame = 2
Query:    5 SESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITL 619
            +E+ +P + +PKA R    RI  FY+L   +I  ++       V        SPFV+      I     I+NA IL+A  S+ NS  +  SR++    +D +LP++F +++   VP  A++                  +Q F +L+      G + +  L +  I  +A LK +    ET  +   + PY  W   +    I +
Sbjct:  223 AETKNPEKVVPKAVRSTLTRIVAFYLLPFFIIVSLIPWNQVNSVP------ESPFVMVFKMVGIPGADHIMNAVILLAIISSMNSGLYGSSRILYTQASDGRLPKVFSKLSSKNVPMFAILMC-TSSLYIGVLISLFAGSQTFNYLM------GSLGYTVLFIWLIIGFAHLKSRKQQTETPAYYVKWFPYTTWFAIVALLAILI 414          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AROP_SHIFL (Aromatic amino acid transport protein aroP OS=Shigella flexneri GN=aroP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 57/197 (28.93%), Postives = 90/197 (45.69%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILG-ALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWV 589
            A+E+ +P ++IPKA  +V YRI  FYI   A+L+ ++   R T        A++SPFV+         + + +N  +L AA S  NS  +  SRM+  +      P+    V+K GVP V  +                    AF  L+ L   A +I WA + + +++F  A ++Q V    FP  A   P   W+
Sbjct:  224 AAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVT--------ADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVP-VNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTR-FP--ALLYPLGNWI 408          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AROP_ECOLI (Aromatic amino acid transport protein aroP OS=Escherichia coli (strain K12) GN=aroP PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 57/197 (28.93%), Postives = 90/197 (45.69%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILG-ALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWV 589
            A+E+ +P ++IPKA  +V YRI  FYI   A+L+ ++   R T        A++SPFV+         + + +N  +L AA S  NS  +  SRM+  +      P+    V+K GVP V  +                    AF  L+ L   A +I WA + + +++F  A ++Q V    FP  A   P   W+
Sbjct:  224 AAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVT--------ADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVP-VNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTR-FP--ALLYPLGNWI 408          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AROP_ECOL6 (Aromatic amino acid transport protein aroP OS=Escherichia coli O6 GN=aroP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 57/197 (28.93%), Postives = 90/197 (45.69%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILG-ALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWV 589
            A+E+ +P ++IPKA  +V YRI  FYI   A+L+ ++   R T        A++SPFV+         + + +N  +L AA S  NS  +  SRM+  +      P+    V+K GVP V  +                    AF  L+ L   A +I WA + + +++F  A ++Q V    FP  A   P   W+
Sbjct:  223 AAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVT--------ADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVP-VNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTR-FP--ALLYPLGNWI 407          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: GABP_BACSU (GABA permease OS=Bacillus subtilis GN=gabP PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 54/201 (26.87%), Postives = 91/201 (45.27%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQN-VSRETFPWKAPFQPYAAWVGFIG 601
            A E+ +P  ++ KA R V +RI  FY+ G++ I + + P        S N   SPFV  + +  + A   I+N  +L A  S  NS  +  SRM+ ++   ++ P+ F +++K GVP  A+VA                    F +L+N S    L+ +  + V  ++    L+K N  + +   W  PF  Y   +   G
Sbjct:  222 AGETSNPIESVTKATRSVVWRIIVFYV-GSIAIVVALLPW------NSANILESPFVAVLEHIGVPAAAQIMNFIVLTAVLSCLNSGLYTTSRMLYSLAERNEAPRRFMKLSKKGVPVQAIVAG-TFFSYIAVVMNYFSPDTVFLFLVNSSGAIALLVYLVIAVSQLKMRKKLEKTNPEALKIKMWLFPFLTYLTIIAICG 414          
The following BLAST results are available for this feature:
BLAST of FC932125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ANSP2_MYCBO5.488e-1324.04L-asparagine permease 2 OS=Mycobacterium bovis GN=... [more]
YDGF_BACSU7.167e-1326.44Uncharacterized transporter ydgF OS=Bacillus subti... [more]
MMUP_ECOLI1.223e-1225.13Probable S-methylmethionine permease OS=Escherichi... [more]
AROP_ECO571.597e-1227.40Aromatic amino acid transport protein aroP OS=Esch... [more]
ANSP_STRCO2.085e-1223.50L-asparagine permease OS=Streptomyces coelicolor G... [more]
YVBW_BACSU3.557e-1224.88Uncharacterized amino acid permease yvbW OS=Bacill... [more]
AROP_SHIFL4.646e-1228.93Aromatic amino acid transport protein aroP OS=Shig... [more]
AROP_ECOLI4.646e-1228.93Aromatic amino acid transport protein aroP OS=Esch... [more]
AROP_ECOL64.646e-1228.93Aromatic amino acid transport protein aroP OS=Esch... [more]
GABP_BACSU6.068e-1226.87GABA permease OS=Bacillus subtilis GN=gabP PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC34204H08EF PostHarveN Citrus clementina cDNA clone C34204H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932125 ID=FC932125; Name=FC932125; organism=Citrus clementina; type=EST; length=718bp
CGCATCTGAGTCGGTTGATCCTCATCGTGCTATTCCCAAAGCCGCCCGTC
GTGTGACTTACCGCATTGCCTTCTTCTACATTCTCGGAGCACTTCTCATC
GGCATGATCGTGGACCCAAGAGCCACAGGCCTGGTCTCCGGCTCTGGCAA
CGCGAACAGCTCGCCCTTTGTGATTGCCATCACCAACGCCAGCATCAACG
CTCTGCCCTCGATCGTGAATGCATGCATTCTCATTGCCGCGTGGTCTGCC
GGTAACTCATACTGCTGGGTCGGATCACGCATGATTGTCGCCATGACTAC
AGACCACCAGCTGCCCCAGATCTTCGGCCGCGTAAACAAGCACGGTGTGC
CATATGTGGCTGTCGTCGCCGCCTGGCTCTTTGGGCCGCTGCCGTACCTG
AGTCTCGGTAGCGGTGGCGCAGCGCAGGCATTCACCTGGCTTCTGAACCT
CAGCACGGTTGCCGGTCTGATCGCTTGGGCAACCCTTTGCGTCTGCTACA
TTCGTTTCTATGCCGCATTGAAGAAGCAAAATGTGAGCCGAGAAACTTTC
CCATGGAAAGCACCCTTTCAACCTTATGCCGCATGGGTAGGCTTTATCGG
CTCTACTATCATTACTTTGGTTGCTGGTTTCCCCGTGTTTTTGAAGGGCA
ACTGGAGTACGTCCAACTTCGTTGCATCGTACATCGGTATCCCCATCTTC
ATCGNTCCCATCATTTGC
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