FC932125

Overview
NameFC932125
Unique NameFC932125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: PROY_SALTY (Proline-specific permease proY OS=Salmonella typhimurium GN=proY PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 55/210 (26.19%), Postives = 88/210 (41.90%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPYAAWVGFIGSTIITLVAGF 631
            A E+ DP ++IP+A   V  RI  FY+ G L + M + P            N SPFV+   +  I    SI+N  +L A+ SA NS  +   RM+  M      P++F + ++ G+P+V V+                     F  + +L+T A +  W  + +  I F   L  + V  +   +K P        G I    I  + G+
Sbjct:  222 AGEAKDPEKSIPRAINSVPMRILVFYV-GTLFVIMSIYPW------NQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGIPWVTVL-VMTIALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEV--KALKFKVPGGVVTTIAGLIFLVFIIALIGY 421          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AROP_SALTY (Aromatic amino acid transport protein aroP OS=Salmonella typhimurium GN=aroP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 56/193 (29.02%), Postives = 92/193 (47.67%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILG-ALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPY 577
            A+E+ +P ++IPKA  +V YRI  FYI   A+L+ ++   R T        A++SPFV+         + + +N  +L AA S  NS  +  SRM+  +      P+    V+K GVP  +++ +                  AF  L+ L   A +I WA + + ++ F  A ++Q V +  FP  A F P+
Sbjct:  224 AAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLLPWTRVT--------ADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALLNVDKRGVPVSSILVS-AVVTALCVLLNYLAPESAFGLLMALVVSALVINWAMISLAHMMFRRAKQQQGV-KTRFP--ALFYPF 404          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: AROP_SALTI (Aromatic amino acid transport protein aroP OS=Salmonella typhi GN=aroP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 56/193 (29.02%), Postives = 92/193 (47.67%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILG-ALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETFPWKAPFQPY 577
            A+E+ +P ++IPKA  +V YRI  FYI   A+L+ ++   R T        A++SPFV+         + + +N  +L AA S  NS  +  SRM+  +      P+    V+K GVP  +++ +                  AF  L+ L   A +I WA + + ++ F  A ++Q V +  FP  A F P+
Sbjct:  224 AAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLLPWTRVT--------ADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALLNVDKRGVPVSSILVS-AVVTALCVLLNYLAPESAFGLLMALVVSALVINWAMISLAHMMFRRAKQQQGV-KTRFP--ALFYPF 404          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: PROY_ECOLI (Proline-specific permease proY OS=Escherichia coli (strain K12) GN=proY PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 51/183 (27.87%), Postives = 80/183 (43.72%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETF 550
            A E+ DP ++IP+A   V  RI  FY+ G L + M + P      +GS      PFV+   +  I    SI+N  +L A+ SA NS  +   RM+  M      P+IF + ++ G+P+V V+                     F  + +L+T A +  W  + +  I F   L  + V    F
Sbjct:  222 AGEAKDPEKSIPRAINSVPMRILVFYV-GTLFVIMSIYPWNQVGTAGS------PFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVL-VMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKF 396          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: PROY_ECOL6 (Proline-specific permease proY OS=Escherichia coli O6 GN=proY PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 51/183 (27.87%), Postives = 80/183 (43.72%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETF 550
            A E+ DP ++IP+A   V  RI  FY+ G L + M + P      +GS      PFV+   +  I    SI+N  +L A+ SA NS  +   RM+  M      P+IF + ++ G+P+V V+                     F  + +L+T A +  W  + +  I F   L  + V    F
Sbjct:  222 AGEAKDPEKSIPRAINSVPMRILVFYV-GTLFVIMSIYPWNQVGTAGS------PFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVL-VMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKF 396          
BLAST of FC932125 vs. ExPASy Swiss-Prot
Match: PROY_ECO57 (Proline-specific permease proY OS=Escherichia coli O157:H7 GN=proY PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 51/183 (27.87%), Postives = 80/183 (43.72%), Query Frame = 2
Query:    2 ASESVDPHRAIPKAARRVTYRIAFFYILGALLIGMIVDPRATGLVSGSGNANSSPFVIAITNASINALPSIVNACILIAAWSAGNSYCWVGSRMIVAMTTDHQLPQIFGRVNKHGVPYVAVVAAWXXXXXXXXXXXXXXAAQAFTWLLNLSTVAGLIAWATLCVCYIRFYAALKKQNVSRETF 550
            A E+ DP ++IP+A   V  RI  FY+ G L + M + P      +GS      PFV+   +  I    SI+N  +L A+ SA NS  +   RM+  M      P+IF + ++ G+P+V V+                     F  + +L+T A +  W  + +  I F   L  + V    F
Sbjct:  222 AGEAKDPEKSIPRAINSVPMRILVFYV-GTLFVIMSIYPWNQVGTAGS------PFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVL-VMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKF 396          
The following BLAST results are available for this feature:
BLAST of FC932125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PROY_SALTY7.924e-1226.19Proline-specific permease proY OS=Salmonella typhi... [more]
AROP_SALTY7.924e-1229.02Aromatic amino acid transport protein aroP OS=Salm... [more]
AROP_SALTI7.924e-1229.02Aromatic amino acid transport protein aroP OS=Salm... [more]
PROY_ECOLI8.761e-1127.87Proline-specific permease proY OS=Escherichia coli... [more]
PROY_ECOL68.761e-1127.87Proline-specific permease proY OS=Escherichia coli... [more]
PROY_ECO578.761e-1127.87Proline-specific permease proY OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC34204H08EF PostHarveN Citrus clementina cDNA clone C34204H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932125 ID=FC932125; Name=FC932125; organism=Citrus clementina; type=EST; length=718bp
CGCATCTGAGTCGGTTGATCCTCATCGTGCTATTCCCAAAGCCGCCCGTC
GTGTGACTTACCGCATTGCCTTCTTCTACATTCTCGGAGCACTTCTCATC
GGCATGATCGTGGACCCAAGAGCCACAGGCCTGGTCTCCGGCTCTGGCAA
CGCGAACAGCTCGCCCTTTGTGATTGCCATCACCAACGCCAGCATCAACG
CTCTGCCCTCGATCGTGAATGCATGCATTCTCATTGCCGCGTGGTCTGCC
GGTAACTCATACTGCTGGGTCGGATCACGCATGATTGTCGCCATGACTAC
AGACCACCAGCTGCCCCAGATCTTCGGCCGCGTAAACAAGCACGGTGTGC
CATATGTGGCTGTCGTCGCCGCCTGGCTCTTTGGGCCGCTGCCGTACCTG
AGTCTCGGTAGCGGTGGCGCAGCGCAGGCATTCACCTGGCTTCTGAACCT
CAGCACGGTTGCCGGTCTGATCGCTTGGGCAACCCTTTGCGTCTGCTACA
TTCGTTTCTATGCCGCATTGAAGAAGCAAAATGTGAGCCGAGAAACTTTC
CCATGGAAAGCACCCTTTCAACCTTATGCCGCATGGGTAGGCTTTATCGG
CTCTACTATCATTACTTTGGTTGCTGGTTTCCCCGTGTTTTTGAAGGGCA
ACTGGAGTACGTCCAACTTCGTTGCATCGTACATCGGTATCCCCATCTTC
ATCGNTCCCATCATTTGC
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