FC932130

Overview
NameFC932130
Unique NameFC932130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_CRYNE (Nucleolar protein 58 OS=Cryptococcus neoformans GN=NOP58 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 45/150 (30.00%), Postives = 72/150 (48.00%), Query Frame = 3
Query:   12 LLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS 461
            LLP  +   +   A  + G  + +  +      CD+            +++ +RM  IAPNL+A+VG  V A+L+  AG L  LAK PA  VQ+LGA+K       T     + G +    +    P  L+ +  R++A K+ L+ RVD+
Sbjct:  236 LLPEDLEATLKSAAELSMGTEISDSDMTHIHSLCDQVISISEYRTQLSEYLRNRMQAIAPNLTALVGELVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAPQKLKGKMARMVATKAALSIRVDA 385          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_SCHPO (Nucleolar protein 58 OS=Schizosaccharomyces pombe GN=nop58 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 49/173 (28.32%), Postives = 80/173 (46.24%), Query Frame = 3
Query:   12 LLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVD--STRGDPSGTAGRSFREEIHKKI 524
            +LP  I   +   A  + G  + E+ L   +   D+            +++ +RM  IAPNL+A+VG  V A+L+  AG L  LAK PA  +Q+LGA+K       T  S  + G +    +        + +  R+LA K+ L+ RVD  S +   +G  G   R  +  ++
Sbjct:  226 ILPEEIEATLKSAAEISMGTEITEEDLDNIVMLADQVLELASYRAQLSEYLRNRMQAIAPNLTALVGELVGARLIAHAGSLMNLAKQPASTIQILGAEKALFRALKTKHSTPKYGLIYHASLVGQANSKNKGKIARVLATKAALSLRVDALSDKDTTNGNIGLENRIRVENRL 398          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: PRP31_YEAST (Pre-mRNA-processing factor 31 OS=Saccharomyces cerevisiae GN=PRP31 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 49/174 (28.16%), Postives = 87/174 (50.00%), Query Frame = 3
Query:   27 IIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFR-VGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDS--TRGDPSGTAGRSFREEIHKKIEKWQE 539
            +++ +S+  S  + +PL      + ++A                ++ S++S IAPN+  +VG  +AA+L+  AGG+   +++P+CN+  +G  K       T  S  R  GYL  +++ Q  P  +  +  R+L AK +LAARVD+    GD +      ++ E+ KK  K  E
Sbjct:  173 LVLTMSMKTSFKNKEPLDIKTRTQILEANSILENLWKLQEDIGQYIASKISIIAPNVCFLVGPEIAAQLIAHAGGVLEFSRIPSCNIASIGKNKHLSHELHTLESGVRQEGYLFASDMIQKFPVSVHKQMLRMLCAKVSLAARVDAGQKNGDRNTVLAHKWKAELSKKARKLSE 346          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP58_LODEL (Nucleolar protein 58 OS=Lodderomyces elongisporus GN=NOP58 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 51/178 (28.65%), Postives = 81/178 (45.51%), Query Frame = 3
Query:    3 LEGLLPSAIIMVVSVTASTTSGKPLPEDALQKTIDACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVD--STRGDPSGTAGRSFREEIHKKIEK 530
            L  +LP  I   V   A  + G  + E+ L+      ++            +++ SRM  IAPNL+A+VG  V A+ +  AG L++LAK PA  +Q+LGA+K       T     + G +    +        + R  R LAAK+ L+ R D      D S + G   R ++  ++ K
Sbjct:  223 LSEILPEEIEEQVKTAAEVSMGTEITENDLENIKALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTAMVGDLVGARFIAHAGSLTSLAKAPASTIQILGAEKALFRALKTKHDTPKYGIIYHASLVGQASGKNKGRIARTLAAKAALSVRYDCFDEERDDSDSFGLDNRGKVESRLSK 400          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP56_PONAB (Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  159 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 536
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP56_MOUSE (Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  159 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 536
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP56_MACFA (Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  159 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 536
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP56_HUMAN (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  159 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 536
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP56_BOVIN (Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 41/126 (32.54%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  159 FVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKIEKWQ 536
            ++ S+MS +AP+LSA++G AV A+L+  AG L+ LAK PA  VQ+LGA+K       T  +  + G +  +          + R  R LA K ++A+R+D     P+   G   RE++ +++  ++
Sbjct:  284 YLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYE 409          
BLAST of FC932130 vs. ExPASy Swiss-Prot
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 44/140 (31.43%), Postives = 69/140 (49.29%), Query Frame = 3
Query:  105 DACDRXXXXXXXXXXXXDFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQSTPPPLRMRACRLLAAKSTLAARVDSTRGDPSGTAGRSFREEIHKKI 524
            + CD+            D+++SRM+ IAPNL+A+VG  V A+L+   G L  L+K P   VQ+LGA+K       T  +  + G +    +     P  + +  R LAAK+ LA RVD+       T G   R ++  ++
Sbjct:  255 ELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLSKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASLVGQAAPKHKGKISRSLAAKTVLAIRVDALGDSQDNTMGLENRAKLEARL 394          
The following BLAST results are available for this feature:
BLAST of FC932130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
NOP58_CRYNE2.058e-1430.00Nucleolar protein 58 OS=Cryptococcus neoformans GN... [more]
NOP58_SCHPO3.511e-1428.32Nucleolar protein 58 OS=Schizosaccharomyces pombe ... [more]
PRP31_YEAST4.586e-1428.16Pre-mRNA-processing factor 31 OS=Saccharomyces cer... [more]
NOP58_LODEL5.989e-1428.65Nucleolar protein 58 OS=Lodderomyces elongisporus ... [more]
NOP56_PONAB5.989e-1432.54Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2... [more]
NOP56_MOUSE5.989e-1432.54Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1... [more]
NOP56_MACFA5.989e-1432.54Nucleolar protein 56 OS=Macaca fascicularis GN=NOP... [more]
NOP56_HUMAN5.989e-1432.54Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1... [more]
NOP56_BOVIN5.989e-1432.54Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 S... [more]
NOP5B_ARATH1.022e-1331.43Probable nucleolar protein 5-2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC34205A01EF PostHarveN Citrus clementina cDNA clone C34205A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932130 ID=FC932130; Name=FC932130; organism=Citrus clementina; type=EST; length=688bp
ATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTGGTGTCCGTCACG
GCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGCCCTTCAAAAGAC
AATTGATGCATGTGATCGAGCTCTTGCACTTGGTGCAGCAAAGAAGAAGG
TCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCGCCCAATCTATCT
GCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGGAACGGCTGGTGG
TCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTCAGCTTCTTGGCG
CAAAGAAAAAGAATCTTGCTGGTTTTTCTACTGCAACATCTCAATTCCGT
GTAGGTTATCTTGAGCAGACAGAGATATTTCAAAGTACACCTCCACCTCT
AAGGATGCGTGCCTGCCGACTCTTGGCTGCAAAATCAACACTTGCAGCAC
GTGTTGATTCTACTAGAGGAGATCCTTCTGGAACTGCTGGGAGGTCTTTC
AGAGAAGAGATTCACAAGAAGATTGAAAAGTGGCAAGAGCCTCCTCCTGC
AAAGCAACCTAAACCTCTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGA
GGGGTGGTCGACGGTTAAGGAAGATGAAAGAAGATATGCTGTAACAGATA
TGAGAAAACTGGCTAATAGAATGCTATTTGGTGTACCT
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